|
| Status |
Public on Oct 24, 2012 |
| Title |
UW_DnaseSeq_NT2-D1Rep1 |
| Sample type |
SRA |
| |
|
| Source name |
NT2-D1
|
| Organism |
Homo sapiens |
| Characteristics |
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: NT2-D1
cell organism: human
cell description: malignant pluripotent embryonal carcinoma (NTera-2), "The NTERA-2 cl.D1 cell line is a pluripotent human testicular embryonal carcinoma cell line derived by cloning the NTERA-2 cell line." - ATCC. (PMID: 6694356)
cell karyotype: cancer
cell lineage: inner cell mass
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS14575
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
|
| Biomaterial provider |
ATCC
|
| Treatment protocol |
None
|
| Growth protocol |
NT2-D1_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
|
| |
|
| Library strategy |
DNase-Hypersensitivity |
| Library source |
genomic |
| Library selection |
DNAse |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
|
| |
|
| Submission date |
Oct 24, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (2) |
| GSE29692 |
DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington |
| GSE51336 |
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution |
|
| Relations |
| Reanalyzed by |
GSE53962 |
| Reanalyzed by |
GSE54296 |
| Reanalyzed by |
GSE59016 |
| SRA |
SRX201261 |
| BioSample |
SAMN01780200 |
| Named Annotation |
GSM1024751_hg19_wgEncodeUwDnaseNt2d1RawRep1.bigWig |
