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Series GSE53962

Query DataSets for GSE53962

Status

Public on Oct 12, 2014

Title

Transcription Factor Binding Sites by Motifs Scan

Sample organism

Homo sapiens

Experiment type

Third-party reanalysis
Genome binding/occupancy profiling by high throughput sequencing

Summary

Purpose: 224 GSM Samples form GSE32970 and GSE29692 was reanalyzed to find the binding sites of 542 TFs.
Methods: 1. iFORM (incorporating Find Occurrence of Regulatory Motifs) is a tool we designed to scan through sequences in search of binding sites that match given motifs. 2. We mapped motif-binding protein information found in TRANSFAC, JASPAR, and UniPROBE databases to 542 coding genes, using GeneCards (Rebhan et al., 1997) and UniProt Knowledgebase (Magrane and Consortium, 2011). The position-specific weight matrices of the 542 TFs, corresponding to 796 motif models, were collected from these databases. 3.We used a uniform set of open chromatin elements (DNaseI hypersensitive sites, DHSs) in 133 ENCODE cell types, based on DNase-seq data produced by the "Open Chromatin" (Duke/UNC/UT-A)(GSE32970) and University of Washington (UW) ENCODE groups (GSE29692)from the project inception in 2007 through the ENCODE January 2011 data freeze. Processing pipeline: Combined all replicates for a given cell type; Subsampled the result at a level of 30 million tags; Ran results through the Stam Lab hotspot pipeline. Hotspots were identified using a relaxed threshold. NarrowPeaks were generated by first thresholding hotspots at FDR 1%, and then locating local maxima of the tag density within the hotspots. The 133 narrowPeaks are base sequences for the given motifs scan.
Result: We used our iFORM with a custom library of all 796 motifs to scan for motif instances in 133 ENCODE DHSs cell types separately. Result in 133 files correspond to 133 cell types, each file contains binding sites of 542 TFs in a cell type.

Overall design

Binding Sites of 542 TFs in 133 Cell types. 54 GSM Samples from GSE32970 and 170 GSM Samples from GSE29692 were combined to 133 cell types.

Contributor(s)

Shu W, Chen H

Citation(s)

25682954

Submission date

Jan 09, 2014

Last update date

Feb 17, 2015

Contact name

Wenjie Shu

E-mail(s)

shuwj@bmi.ac.cn

Organization name

Beijing Institute of Radiation Medicine

Street address

Taiping Road 27

City

Beijing

ZIP/Postal code

100850

Country

China

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BioProject

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE53962_file_key.txt.gz	1.8 Kb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnase8988T.fdr01peak.hg19.peak.txt.gz	13.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnase8988T.fdr01peaks.hg19.peak.txt.gz	13.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseAoSMC.fdr01peak.hg19.peak.txt.gz	12.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseAoSMC.fdr01peaks.hg19.peak.txt.gz	12.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseCLL.fdr01peak.hg19.peak.txt.gz	7.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseCLL.fdr01peaks.hg19.peak.txt.gz	7.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseChorion.fdr01peak.hg19.peak.txt.gz	12.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseChorion.fdr01peaks.hg19.peak.txt.gz	12.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseFibroP.fdr01peak.hg19.peak.txt.gz	18.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseFibroP.fdr01peaks.hg19.peak.txt.gz	18.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseFibrobl.fdr01peak.hg19.peak.txt.gz	28.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseFibrobl.fdr01peaks.hg19.peak.txt.gz	28.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseGM12891.fdr01peak.hg19.peak.txt.gz	10.6 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseGM12891.fdr01peaks.hg19.peak.txt.gz	10.6 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseGM12892.fdr01peak.hg19.peak.txt.gz	11.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseGM12892.fdr01peaks.hg19.peak.txt.gz	11.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseGM18507.fdr01peak.hg19.peak.txt.gz	9.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseGM18507.fdr01peaks.hg19.peak.txt.gz	9.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseGM19238.fdr01peak.hg19.peak.txt.gz	11.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseGM19238.fdr01peaks.hg19.peak.txt.gz	11.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseGM19239.fdr01peak.hg19.peak.txt.gz	9.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseGM19239.fdr01peaks.hg19.peak.txt.gz	9.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseGM19240.fdr01peak.hg19.peak.txt.gz	13.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseGM19240.fdr01peaks.hg19.peak.txt.gz	13.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseGliobla.fdr01peak.hg19.peak.txt.gz	12.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseGliobla.fdr01peaks.hg19.peak.txt.gz	12.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseH9ES.fdr01peak.hg19.peak.txt.gz	11.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseH9ES.fdr01peaks.hg19.peak.txt.gz	11.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseHPDE6E6E7.fdr01peak.hg19.peak.txt.gz	10.6 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseHPDE6E6E7.fdr01peaks.hg19.peak.txt.gz	10.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseHSMMemb.fdr01peak.hg19.peak.txt.gz	9.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseHSMMemb.fdr01peaks.hg19.peak.txt.gz	9.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseHTR8svn.fdr01peak.hg19.peak.txt.gz	9.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseHTR8svn.fdr01peaks.hg19.peak.txt.gz	9.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseHeLaS3IFNa4h.fdr01peak.hg19.peak.txt.gz	8.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseHeLaS3IFNa4h.fdr01peaks.hg19.peak.txt.gz	8.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseHepatocytes.fdr01peak.hg19.peak.txt.gz	12.6 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseHepatocytes.fdr01peaks.hg19.peak.txt.gz	12.6 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseHuh7.5.fdr01peak.hg19.peak.txt.gz	13.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseHuh7.5.fdr01peaks.hg19.peak.txt.gz	13.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseHuh7.fdr01peak.hg19.peak.txt.gz	11.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseHuh7.fdr01peaks.hg19.peak.txt.gz	11.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseIshikawaEstradiol.fdr01peak.hg19.peak.txt.gz	10.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseIshikawaEstradiol.fdr01peaks.hg19.peak.txt.gz	10.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseIshikawaTamoxifen.fdr01peak.hg19.peak.txt.gz	10.6 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseIshikawaTamoxifen.fdr01peaks.hg19.peak.txt.gz	10.6 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseLNCaPAndrogen.fdr01peak.hg19.peak.txt.gz	10.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseLNCaPAndrogen.fdr01peaks.hg19.peak.txt.gz	10.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseMCF7Hypoxia.fdr01peak.hg19.peak.txt.gz	10.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseMCF7Hypoxia.fdr01peaks.hg19.peak.txt.gz	10.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseMedullo.fdr01peak.hg19.peak.txt.gz	16.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseMedullo.fdr01peaks.hg19.peak.txt.gz	16.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseMelano.fdr01peak.hg19.peak.txt.gz	20.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseMelano.fdr01peaks.hg19.peak.txt.gz	20.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseMyometr.fdr01peak.hg19.peak.txt.gz	12.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseMyometr.fdr01peaks.hg19.peak.txt.gz	12.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseOsteobl.fdr01peak.hg19.peak.txt.gz	26.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseOsteobl.fdr01peaks.hg19.peak.txt.gz	26.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnasePanIsletD.fdr01peak.hg19.peak.txt.gz	15.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnasePanIsletD.fdr01peaks.hg19.peak.txt.gz	15.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnasePanIslets.fdr01peak.hg19.peak.txt.gz	13.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnasePanIslets.fdr01peaks.hg19.peak.txt.gz	13.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseProgFib.fdr01peak.hg19.peak.txt.gz	15.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseProgFib.fdr01peaks.hg19.peak.txt.gz	15.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseRWPE1.fdr01peak.hg19.peak.txt.gz	11.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseRWPE1.fdr01peaks.hg19.peak.txt.gz	11.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseStellate.fdr01peak.hg19.peak.txt.gz	12.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseStellate.fdr01peaks.hg19.peak.txt.gz	12.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseT47D.fdr01peak.hg19.peak.txt.gz	10.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseT47D.fdr01peaks.hg19.peak.txt.gz	10.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseTh0.fdr01peak.hg19.peak.txt.gz	14.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseTh0.fdr01peaks.hg19.peak.txt.gz	14.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseUrothelia.fdr01peak.hg19.peak.txt.gz	11.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseUrothelia.fdr01peaks.hg19.peak.txt.gz	11.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseUrotheliaUT189.fdr01peak.hg19.peak.txt.gz	13.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseUrotheliaUT189.fdr01peaks.hg19.peak.txt.gz	13.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseiPS.fdr01peak.hg19.peak.txt.gz	14.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnaseiPS.fdr01peaks.hg19.peak.txt.gz	14.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnasepHTE.fdr01peak.hg19.peak.txt.gz	19.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeDukeDnasepHTE.fdr01peaks.hg19.peak.txt.gz	19.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseA549.fdr01peak.hg19.peak.txt.gz	13.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseA549.fdr01peaks.hg19.peak.txt.gz	13.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseGM12878.fdr01peak.hg19.peak.txt.gz	13.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseGM12878.fdr01peaks.hg19.peak.txt.gz	13.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseH1hESC.fdr01peak.hg19.peak.txt.gz	18.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseH1hESC.fdr01peaks.hg19.peak.txt.gz	18.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseHMEC.fdr01peak.hg19.peak.txt.gz	24.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseHMEC.fdr01peaks.hg19.peak.txt.gz	24.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseHSMM.fdr01peak.hg19.peak.txt.gz	22.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseHSMM.fdr01peaks.hg19.peak.txt.gz	22.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseHSMMtube.fdr01peak.hg19.peak.txt.gz	23.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseHSMMtube.fdr01peaks.hg19.peak.txt.gz	23.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseHUVEC.fdr01peak.hg19.peak.txt.gz	15.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseHUVEC.fdr01peaks.hg19.peak.txt.gz	15.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseHeLaS3.fdr01peak.hg19.peak.txt.gz	15.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseHeLaS3.fdr01peaks.hg19.peak.txt.gz	15.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseHepG2.fdr01peak.hg19.peak.txt.gz	14.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseHepG2.fdr01peaks.hg19.peak.txt.gz	14.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseK562.fdr01peak.hg19.peak.txt.gz	15.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseK562.fdr01peaks.hg19.peak.txt.gz	15.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseLNCaP.fdr01peak.hg19.peak.txt.gz	23.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseLNCaP.fdr01peaks.hg19.peak.txt.gz	23.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseMCF7.fdr01peak.hg19.peak.txt.gz	14.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseMCF7.fdr01peaks.hg19.peak.txt.gz	14.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseNHEK.fdr01peak.hg19.peak.txt.gz	15.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseNHEK.fdr01peaks.hg19.peak.txt.gz	15.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseTh1.fdr01peak.hg19.peak.txt.gz	22.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUWDukeDnaseTh1.fdr01peaks.hg19.peak.txt.gz	22.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseAG04449.fdr01peak.hg19.peak.txt.gz	12.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseAG04449.fdr01peaks.hg19.peak.txt.gz	12.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseAG04450.fdr01peak.hg19.peak.txt.gz	11.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseAG04450.fdr01peaks.hg19.peak.txt.gz	11.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseAG09309.fdr01peak.hg19.peak.txt.gz	14.6 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseAG09309.fdr01peaks.hg19.peak.txt.gz	14.6 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseAG09319.fdr01peak.hg19.peak.txt.gz	10.6 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseAG09319.fdr01peaks.hg19.peak.txt.gz	10.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseAG10803.fdr01peak.hg19.peak.txt.gz	12.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseAG10803.fdr01peaks.hg19.peak.txt.gz	12.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseAoAF.fdr01peak.hg19.peak.txt.gz	12.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseAoAF.fdr01peaks.hg19.peak.txt.gz	12.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseBE2C.fdr01peak.hg19.peak.txt.gz	12.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseBE2C.fdr01peaks.hg19.peak.txt.gz	12.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseBJ.fdr01peak.hg19.peak.txt.gz	12.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseBJ.fdr01peaks.hg19.peak.txt.gz	12.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseCD20.fdr01peak.hg19.peak.txt.gz	8.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseCD20.fdr01peaks.hg19.peak.txt.gz	8.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseCD34Mobilized.fdr01peak.hg19.peak.txt.gz	13.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseCD34Mobilized.fdr01peaks.hg19.peak.txt.gz	13.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseCMK.fdr01peak.hg19.peak.txt.gz	10.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseCMK.fdr01peaks.hg19.peak.txt.gz	10.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseCaco2.fdr01peak.hg19.peak.txt.gz	9.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseCaco2.fdr01peaks.hg19.peak.txt.gz	9.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseGM06990.fdr01peak.hg19.peak.txt.gz	7.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseGM06990.fdr01peaks.hg19.peak.txt.gz	7.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseGM12864.fdr01peak.hg19.peak.txt.gz	10.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseGM12864.fdr01peaks.hg19.peak.txt.gz	10.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseGM12865.fdr01peak.hg19.peak.txt.gz	10.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseGM12865.fdr01peaks.hg19.peak.txt.gz	10.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseH7hESC.fdr01peak.hg19.peak.txt.gz	19.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseH7hESC.fdr01peaks.hg19.peak.txt.gz	19.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHAEpiC.fdr01peak.hg19.peak.txt.gz	15.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHAEpiC.fdr01peaks.hg19.peak.txt.gz	15.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHAc.fdr01peak.hg19.peak.txt.gz	13.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHAc.fdr01peaks.hg19.peak.txt.gz	13.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHAh.fdr01peak.hg19.peak.txt.gz	14.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHAh.fdr01peaks.hg19.peak.txt.gz	14.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHAsp.fdr01peak.hg19.peak.txt.gz	13.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHAsp.fdr01peaks.hg19.peak.txt.gz	13.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHBMEC.fdr01peak.hg19.peak.txt.gz	14.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHBMEC.fdr01peaks.hg19.peak.txt.gz	14.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHCF.fdr01peak.hg19.peak.txt.gz	13.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHCF.fdr01peaks.hg19.peak.txt.gz	13.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHCFaa.fdr01peak.hg19.peak.txt.gz	13.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHCFaa.fdr01peaks.hg19.peak.txt.gz	13.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHCM.fdr01peak.hg19.peak.txt.gz	14.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHCM.fdr01peaks.hg19.peak.txt.gz	14.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHCPEpiC.fdr01peak.hg19.peak.txt.gz	15.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHCPEpiC.fdr01peaks.hg19.peak.txt.gz	15.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHCT116.fdr01peak.hg19.peak.txt.gz	8.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHCT116.fdr01peaks.hg19.peak.txt.gz	8.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHConF.fdr01peak.hg19.peak.txt.gz	11.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHConF.fdr01peaks.hg19.peak.txt.gz	11.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHEEpiC.fdr01peak.hg19.peak.txt.gz	15.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHEEpiC.fdr01peaks.hg19.peak.txt.gz	15.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHFF.fdr01peak.hg19.peak.txt.gz	14.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHFF.fdr01peaks.hg19.peak.txt.gz	14.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHFFMyc.fdr01peak.hg19.peak.txt.gz	15.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHFFMyc.fdr01peaks.hg19.peak.txt.gz	15.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHGF.fdr01peak.hg19.peak.txt.gz	10.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHGF.fdr01peaks.hg19.peak.txt.gz	10.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHIPEpiC.fdr01peak.hg19.peak.txt.gz	16.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHIPEpiC.fdr01peaks.hg19.peak.txt.gz	16.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHL60.fdr01peak.hg19.peak.txt.gz	12.6 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHL60.fdr01peaks.hg19.peak.txt.gz	12.6 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMF.fdr01peak.hg19.peak.txt.gz	13.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMF.fdr01peaks.hg19.peak.txt.gz	13.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMVECLBl.fdr01peak.hg19.peak.txt.gz	13.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMVECLBl.fdr01peaks.hg19.peak.txt.gz	13.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMVECLLy.fdr01peak.hg19.peak.txt.gz	11.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMVECLLy.fdr01peaks.hg19.peak.txt.gz	11.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMVECdAd.fdr01peak.hg19.peak.txt.gz	9.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMVECdAd.fdr01peaks.hg19.peak.txt.gz	9.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMVECdBlAd.fdr01peak.hg19.peak.txt.gz	13.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMVECdBlAd.fdr01peaks.hg19.peak.txt.gz	13.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMVECdBlNeo.fdr01peak.hg19.peak.txt.gz	13.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMVECdBlNeo.fdr01peaks.hg19.peak.txt.gz	13.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMVECdLyAd.fdr01peak.hg19.peak.txt.gz	10.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMVECdLyAd.fdr01peaks.hg19.peak.txt.gz	10.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMVECdLyNeo.fdr01peak.hg19.peak.txt.gz	12.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMVECdLyNeo.fdr01peaks.hg19.peak.txt.gz	12.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMVECdNeo.fdr01peak.hg19.peak.txt.gz	11.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHMVECdNeo.fdr01peaks.hg19.peak.txt.gz	11.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHNPCEpiC.fdr01peak.hg19.peak.txt.gz	15.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHNPCEpiC.fdr01peaks.hg19.peak.txt.gz	15.6 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHPAEC.fdr01peak.hg19.peak.txt.gz	9.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHPAEC.fdr01peaks.hg19.peak.txt.gz	9.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHPAF.fdr01peak.hg19.peak.txt.gz	14.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHPAF.fdr01peaks.hg19.peak.txt.gz	14.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHPF.fdr01peak.hg19.peak.txt.gz	11.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHPF.fdr01peaks.hg19.peak.txt.gz	11.6 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHPdLF.fdr01peak.hg19.peak.txt.gz	12.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHPdLF.fdr01peaks.hg19.peak.txt.gz	12.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHRCEpiC.fdr01peak.hg19.peak.txt.gz	14.6 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHRCEpiC.fdr01peaks.hg19.peak.txt.gz	14.6 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHRE.fdr01peak.hg19.peak.txt.gz	14.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHRE.fdr01peaks.hg19.peak.txt.gz	14.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHRGEC.fdr01peak.hg19.peak.txt.gz	10.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHRGEC.fdr01peaks.hg19.peak.txt.gz	10.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHRPEpiC.fdr01peak.hg19.peak.txt.gz	17.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHRPEpiC.fdr01peaks.hg19.peak.txt.gz	17.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHVMF.fdr01peak.hg19.peak.txt.gz	12.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseHVMF.fdr01peaks.hg19.peak.txt.gz	12.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseJurkat.fdr01peak.hg19.peak.txt.gz	12.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseJurkat.fdr01peaks.hg19.peak.txt.gz	12.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseMonocytesCD14RO01746.fdr01peak.hg19.peak.txt.gz	10.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseMonocytesCD14RO01746.fdr01peaks.hg19.peak.txt.gz	10.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseNB4.fdr01peak.hg19.peak.txt.gz	11.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseNB4.fdr01peaks.hg19.peak.txt.gz	11.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseNHA.fdr01peak.hg19.peak.txt.gz	14.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseNHA.fdr01peaks.hg19.peak.txt.gz	14.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseNHDFAd.fdr01peak.hg19.peak.txt.gz	16.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseNHDFAd.fdr01peaks.hg19.peak.txt.gz	16.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseNHDFneo.fdr01peak.hg19.peak.txt.gz	13.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseNHDFneo.fdr01peaks.hg19.peak.txt.gz	13.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseNHLF.fdr01peak.hg19.peak.txt.gz	15.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseNHLF.fdr01peaks.hg19.peak.txt.gz	15.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseNT2D1.fdr01peak.hg19.peak.txt.gz	13.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseNT2D1.fdr01peaks.hg19.peak.txt.gz	13.3 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnasePANC1.fdr01peak.hg19.peak.txt.gz	8.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnasePANC1.fdr01peaks.hg19.peak.txt.gz	8.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnasePrEC.fdr01peak.hg19.peak.txt.gz	12.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnasePrEC.fdr01peaks.hg19.peak.txt.gz	12.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseRPTEC.fdr01peak.hg19.peak.txt.gz	12.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseRPTEC.fdr01peaks.hg19.peak.txt.gz	12.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseSAEC.fdr01peak.hg19.peak.txt.gz	14.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseSAEC.fdr01peaks.hg19.peak.txt.gz	14.8 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseSKMC.fdr01peak.hg19.peak.txt.gz	15.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseSKMC.fdr01peaks.hg19.peak.txt.gz	15.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseSKNMC.fdr01peak.hg19.peak.txt.gz	10.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseSKNMC.fdr01peaks.hg19.peak.txt.gz	10.7 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseSKNSHRA.fdr01peak.hg19.peak.txt.gz	7.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseSKNSHRA.fdr01peaks.hg19.peak.txt.gz	7.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseTh1AlnRep1.fdr01peaks.hg19.peak.txt.gz	7.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseTh1wb33676984AlnRep1.fdr01peaks.hg19.peak.txt.gz	8.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseTh1wb54553204AlnRep1.fdr01peaks.hg19.peak.txt.gz	9.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseTh2.fdr01peak.hg19.peak.txt.gz	7.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseTh2.fdr01peaks.hg19.peak.txt.gz	7.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseTh2AlnRep1.fdr01peaks.hg19.peak.txt.gz	7.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseTh2wb33676984AlnRep1.fdr01peaks.hg19.peak.txt.gz	8.2 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseTh2wb54553204AlnRep1.fdr01peaks.hg19.peak.txt.gz	10.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseTregwb78495824AlnRep1.fdr01peaks.hg19.peak.txt.gz	10.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseTregwb83319432AlnRep1.fdr01peaks.hg19.peak.txt.gz	13.9 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseWERIRb1.fdr01peak.hg19.peak.txt.gz	14.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseWERIRb1.fdr01peaks.hg19.peak.txt.gz	14.0 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseWI38.fdr01peak.hg19.peak.txt.gz	12.5 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseWI38.fdr01peaks.hg19.peak.txt.gz	12.4 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseWI38TamoxifenTamoxifen.fdr01peak.hg19.peak.txt.gz	15.1 Mb	(ftp)(http)	TXT
GSE53962_wgEncodeUwDnaseWI38TamoxifenTamoxifen.fdr01peaks.hg19.peak.txt.gz	15.0 Mb	(ftp)(http)	TXT
Processed data are available on Series record