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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 24, 2012 |
| Title |
UW_DnaseSeq_CD20+_RO01778Rep1 |
| Sample type |
SRA |
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| Source name |
CD20+_RO01778
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| Organism |
Homo sapiens |
| Characteristics |
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: CD20+_RO01778
cell organism: human
cell description: B cells, caucasian, draw number 1, newly promoted to tier 2: not in 2011 analysis
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS18208
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
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| Biomaterial provider |
Rajinder Kaul, UW
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| Treatment protocol |
None
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| Growth protocol |
CD20+_Stam_protocol.pdf
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
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| Library strategy |
DNase-Hypersensitivity |
| Library source |
genomic |
| Library selection |
DNAse |
| Instrument model |
Illumina Genome Analyzer |
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| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
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| Submission date |
Oct 24, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
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| Organization name |
ENCODE DCC
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| Street address |
300 Pasteur Dr
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| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
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| Platform ID |
GPL9052 |
| Series (2) |
| GSE29692 |
DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington |
| GSE51336 |
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution |
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| Relations |
| Reanalyzed by |
GSE53962 |
| Reanalyzed by |
GSE54296 |
| Reanalyzed by |
GSE59016 |
| SRA |
SRX201275 |
| BioSample |
SAMN01780214 |
| Named Annotation |
GSM1024765_hg19_wgEncodeUwDnaseCd20ro01778RawRep1.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1024765_hg19_wgEncodeUwDnaseCd20ro01778HotspotsRep1.broadPeak.gz |
2.2 Mb |
(ftp)(http) |
BROADPEAK |
| GSM1024765_hg19_wgEncodeUwDnaseCd20ro01778PkRep1.narrowPeak.gz |
1.2 Mb |
(ftp)(http) |
NARROWPEAK |
| GSM1024765_hg19_wgEncodeUwDnaseCd20ro01778RawRep1.bigWig |
149.9 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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