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Sample GSM1174776 Query DataSets for GSM1174776
Status Public on Jul 20, 2013
Title Heart failure ISACHC class 1 Patient 5
Sample type RNA
 
Channel 1
Source name whole blood
Organism Canis lupus familiaris
Characteristics breed: Dachshund
tissue: whole blood drawn from the cephalic or jugular veins and collected into Rneasy Protect Animal Blood Tubes (Qiagen, USA)
disease state: Heart failure ISACHC class 1
Treatment protocol Blood collection into Rneasy Protect Animal Blood Tubes (Qiagen, USA).
Extracted molecule total RNA
Extraction protocol Total RNA extracted using Rneasy Protect Animal Blood Kit following manufacturer's instructions (Qiagen, USA)
Label Cy5
Label protocol according to the manufacturer's protocol
 
Channel 2
Source name common reference sample compsed of total RNAs isolated from whole blood from 10 healthy dogs
Organism Canis lupus familiaris
Characteristics tissue: whole blood drawn from the cephalic or jugular veins and collected into Rneasy Protect Animal Blood Tubes (Qiagen, USA)
disease state: healthy
Treatment protocol Blood collection into Rneasy Protect Animal Blood Tubes (Qiagen, USA).
Extracted molecule total RNA
Extraction protocol Total RNA extracted using Rneasy Protect Animal Blood Kit following manufacturer's instructions (Qiagen, USA)
Label Cy3
Label protocol according to the manufacturer's protocol
 
 
Hybridization protocol according to the manufacturer's protocol
Scan protocol Scanned on an Agilent G2505C US10353831 scanner. Images were quantified using Agilent Feature Extraction Software (version 10.7.3.1).
Data processing Agilent Feature Extraction Software (v 10.7.3.1) was used for background subtraction and LOWESS normalization.
 
Submission date Jun 26, 2013
Last update date Sep 07, 2013
Contact name Magdalena Łój
E-mail(s) magda.loj@gmail.com
Organization name Warsaw University of Life Sciences
Department Department of Physiological Sciences
Street address Nowoursynowska 166
City Warsaw
ZIP/Postal code 02-787
Country Poland
 
Platform ID GPL15379
Series (1)
GSE48319 The transcriptomic profile of peripheral blood nuclear cells in dogs with heart failure

Data table header descriptions
ID_REF
VALUE Linear Lowess normalized log2 Cy5/Cy3

Data table
ID_REF VALUE
GE_BrightCorner -0.8785534
A_11_P085196 2.0077276
A_11_P000003429 -0.85628843
A_11_P187033 2.0103507
A_11_P000007800 -0.85901225
A_11_P064226 -0.85886985
A_11_P166448 0.1745911
A_11_P187078 -0.8571235
A_11_P163658 -0.053462945
A_11_P0000029785 1.3837471
A_11_P096766 0.66777706
A_11_P198798 0.3164615
A_11_P0000024888 0.27258393
A_11_P0000011420 1.6087532
A_11_P177878 2.2547538
A_11_P000008463 0.30804914
A_11_P168333 -0.8226853
A_11_P056016 2.3352833
A_11_P121766 -0.8119234
A_11_P0000020410 -0.8064132

Total number of rows: 43644

Table truncated, full table size 1117 Kbytes.




Supplementary file Size Download File type/resource
GSM1174776_US10353831_252119310273_S01_GE2_1010_Sep10_1_4.txt.gz 15.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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