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Sample GSM144008 Query DataSets for GSM144008
Status Public on Feb 19, 2008
Title Cervical Long SAGE Library C1
Sample type SAGE
Anchor NlaIII
Tag Count 154828
Tag Length 17
 
Source name tissue biopsy prior to LEEP cone biopsy
Organism Homo sapiens
Characteristics Severe Dysplasia (CIN III) biopsy
Extracted molecule total RNA
Extraction protocol Trizol extraction followed by phenol and precipitation.
 
Description None
Data processing Duplicate ditags have been removed prior to submission to GEO
 
Submission date Nov 08, 2006
Last update date Nov 19, 2008
Contact name Ashleen Shadeo
E-mail(s) ashadeo@bccrc.ca
Organization name BCCRC
Street address 675 West 10th Ave
City Vancouver
ZIP/Postal code V5Z 1L3
Country Canada
 
Platform ID GPL1485
Series (2)
GSE6252 Comprehensive Serial Analysis of Gene Expression of the Cervical Epithelium Transcriptome
GSE7433 Cervical Tissue Long SAGE

Data table header descriptions
TAG
COUNT Raw tag count less duplicate ditags
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 344 2221.82
AAAAAAAAAAAAAAAAC 18 116.26
AAAAAAAAAAAAAAAAG 26 167.93
AAAAAAAAAAAAAAAAT 11 71.05
AAAAAAAAAAAAAAAGA 5 32.29
AAAAAAAAAAAAAAAGG 1 6.46
AAAAAAAAAAAAAAAGT 1 6.46
AAAAAAAAAAAAAAATA 1 6.46
AAAAAAAAAAAAAAGAA 5 32.29
AAAAAAAAAAAAAGAAA 3 19.38
AAAAAAAAAAAAAGAAG 1 6.46
AAAAAAAAAAAACCCTA 1 6.46
AAAAAAAAAAAAGAAAA 2 12.92
AAAAAAAAAAACAAAAC 1 6.46
AAAAAAAAAAAGAAAAA 1 6.46
AAAAAAAAAAAGTTTTT 1 6.46
AAAAAAAAAACAAAAAA 1 6.46
AAAAAAAAAACTTTTGT 1 6.46
AAAAAAAAAAGAAAAAA 2 12.92
AAAAAAAAAAGAGAATA 1 6.46

Total number of rows: 48780

Table truncated, full table size 1206 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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