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| Status |
Public on Feb 19, 2008 |
| Title |
Comprehensive Serial Analysis of Gene Expression of the Cervical Epithelium Transcriptome |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by SAGE
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| Summary |
In this study, we sequenced 691,390 SAGE tags from four libraries. Cervical L-SAGE libraries N1, N2, C1, and C2 were sequenced to 165,624, 181,224, 173,534, and 171,008 tags, respectively. Duplicate ditags were eliminated from analysis resulting in 136,276, 139,656, 154,828 and 136,386 useful tags respectively and a total of 24 058 unique tags. 15,438 of the unique tags mapped to annotated UniGene identifiers. We characterized the transcriptome of normal cervical tissue and evaluated the highly expressed genes in terms of tissue specificity, conserved expression among the normal libraries and their altered expression in CIN III lesions.
Keywords: Cervical Epithelium, Long SAGE
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| Overall design |
Four Long SAGE libraries were created from cervical epithelium biopsies. Two were CIN III and two were normal cervical tissue.
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| Contributor(s) |
Shadeo A, Chari1 R, Vatcher G, Campbell J, Lonergan KM, Matisic J, Van NieKirk D, Ehlen T, Miller D, Follen M, Lam WL, MacAulay C |
| Citation(s) |
18248679 |
| Submission date |
Nov 08, 2006 |
| Last update date |
Mar 16, 2012 |
| Contact name |
Ashleen Shadeo |
| E-mail(s) |
ashadeo@bccrc.ca
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| Organization name |
BCCRC
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| Street address |
675 West 10th Ave
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| City |
Vancouver |
| ZIP/Postal code |
V5Z 1L3 |
| Country |
Canada |
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| Platforms (1) |
| GPL1485 |
SAGE:17:NlaIII:Homo sapiens |
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| Samples (4)
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| Relations |
| BioProject |
PRJNA99681 |
| Supplementary data files not provided |
| Processed data included within Sample table |
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