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GEO accession:
Sample GSM144010
Query DataSets for GSM144010
Status
Public on Feb 19, 2008
Title
Cervical Long SAGE Library C2
Sample type
SAGE
Anchor
NlaIII
Tag Count
136386
Tag Length
17
Source name
tissue biopsy prior to LEEP cone biopsy
Organism
Homo sapiens
Characteristics
Severe Dysplasia (CIN III)
Extracted molecule
total RNA
Extraction protocol
Trizol extraction followed by phenol and precipitation.
Description
None
Data processing
Duplicate ditags have been removed prior to submission to GEO
Submission date
Nov 08, 2006
Last update date
Nov 19, 2008
Contact name
Ashleen Shadeo
E-mail(s)
ashadeo@bccrc.ca
Organization name
BCCRC
Street address
675 West 10th Ave
City
Vancouver
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL1485
Series (2)
GSE6252
Comprehensive Serial Analysis of Gene Expression of the Cervical Epithelium Transcriptome
GSE7433
Cervical Tissue Long SAGE
Data table header descriptions
TAG
COUNT
Raw tag count less duplicate ditags
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAAAAAAAAA
290
2126.32
AAAAAAAAAAAAAAAAC
11
80.65
AAAAAAAAAAAAAAAAG
17
124.65
AAAAAAAAAAAAAAAAT
5
36.66
AAAAAAAAAAAAAAAGA
4
29.33
AAAAAAAAAAAAAAAGG
1
7.33
AAAAAAAAAAAAAAATA
2
14.66
AAAAAAAAAAAAAAGAA
2
14.66
AAAAAAAAAAAAAGAAA
2
14.66
AAAAAAAAAAAAATAAA
1
7.33
AAAAAAAAAAAAGAAAA
1
7.33
AAAAAAAAAAAGAAAAC
1
7.33
AAAAAAAAAAGAAAAAA
1
7.33
AAAAAAAAAAGAAAAAG
1
7.33
AAAAAAAAAATAAAAAG
1
7.33
AAAAAAAAACAAAAAAA
2
14.66
AAAAAAAAACAATGAAG
1
7.33
AAAAAAAAACACCCAGC
1
7.33
AAAAAAAAACTTGTGCT
1
7.33
AAAAAAAAAGAAAAAAA
3
22.00
Total number of rows:
41567
Table truncated, full table size
1028 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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