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Sample GSM1633243 Query DataSets for GSM1633243
Status Public on Jun 28, 2021
Title day7_mock3
Sample type RNA
 
Source name day7_mock3
Organism Homo sapiens
Characteristics time post infection: Day 7 post infection
infection: Mock infection (control)
cell line: Huh7.5.1
Treatment protocol DMSO-differentiated Huh7.5.1 cells were infected with HCV Jc1 clone.
Growth protocol Huh7.5.1 cells were cultured in DMEM with 1% DMSO for 10 days.
Extracted molecule total RNA
Extraction protocol RNA was isolated using RNeasy kit (Qiagen) according to manufacturer’s protocol.
Label biotin
Label protocol Refer to the Illumina beadarray Assay System Manual
 
Hybridization protocol Refer to the Illumina beadarray Assay System Manual
Scan protocol Refer to the Illumina beadarray Assay System Manual
Data processing For each probe, replicated mesurements (beads) were averaged after removing outliers by Genome Studio software v.3 (Illumina). Data were were then normalized using qubic spline algorithm implemented in GenePattern Illumina normalizer module (www.broadinstitute.org/genepattern) after setting a floor value of 1.
 
Submission date Mar 12, 2015
Last update date Jun 28, 2021
Contact name Yujin Hoshida
E-mail(s) Yujin.Hoshida@UTSouthwestern.edu
Organization name University of Texas Southwestern Medical Center
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platform ID GPL10558
Series (2)
GSE66842 Gene expression profiles of differentiated Huh7.5.1 cells infected with HCV Jc1 clone
GSE66843 A cell-based model unravels drivers for hepatocarcinogenesis and targets for clinical chemoprevention

Data table header descriptions
ID_REF
VALUE Normalized signal intensities

Data table
ID_REF VALUE
ILMN_1762337 87.50158513
ILMN_2055271 88.07903463
ILMN_1736007 84.23940923
ILMN_2383229 459.073579
ILMN_1806310 777.2513052
ILMN_1779670 98.02086334
ILMN_1653355 83.74798728
ILMN_1717783 83.86151131
ILMN_1705025 86.31018249
ILMN_1814316 86.07105339
ILMN_1731507 84.29352248
ILMN_1787689 88.30234745
ILMN_3241953 119.9311988
ILMN_1745607 938.2841747
ILMN_2136495 83.56348106
ILMN_1668111 87.50158513
ILMN_1735045 94.19535736
ILMN_1680754 92.54427799
ILMN_2375184 86.98035814
ILMN_1659452 90.17954227

Total number of rows: 46116

Table truncated, full table size 1121 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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