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GEO accession:
Sample GSM2073115
Query DataSets for GSM2073115
Status
Public on Jun 30, 2016
Title
T-REx-293 C-series A3B-eGFP Grand-daugther #1
Sample type
genomic
Source name
T-REx-293 cells expressing A3B-eGFP
Organism
Homo sapiens
Characteristics
cell line: T-REx-293
Growth protocol
T-REx-293 cells were cultured in high glucose DMEM supplemented with 10% FBS and 0.5% Pen/Strep
Extracted molecule
genomic DNA
Extraction protocol
Genomic DNA was prepared using the Gentra PureGene kit (Qiagen, Valencia, CA)
Label
Biotin (C, G), DNP (A,T)
Label protocol
Followed standard Illumina protocol
Hybridization protocol
Followed standard Illumina protocol
Scan protocol
Followed standard Illumina protocol
Data processing
All values were obtained from Illumina GenomeStudio (Genotyping Module)
Submission date
Feb 26, 2016
Last update date
Jun 30, 2016
Contact name
Anita Grigoriadis
Organization name
King's College London
Street address
Great Maze Pond
City
London
ZIP/Postal code
SE1 9RT
Country
United Kingdom
Platform ID
GPL21168
Series (1)
GSE78710
SNP microarray of T-REx-293-based clones overexpressing the DNA cytosine deaminase APOBEC3B
Data table header descriptions
ID_REF
VALUE
genotype calls
GC_SCORE
Theta
R
B_Allele_Freq
Log_R_Ratio
Data table
ID_REF
VALUE
GC_SCORE
Theta
R
B_Allele_Freq
Log_R_Ratio
rs1000000
AB
0.7429
0.298061
2.220297
0.3532
0.14
rs1000002
AB
0.8739
0.4811301
0.8150185
0.5384
-0.4973
rs10000023
BB
0.8232
0.9576449
1.494002
0.9933
-0.1333
rs1000003
AA
0.8941
0.009742857
0.9435908
0
-0.3693
rs10000030
BB
0.7495
0.9901738
0.650929
1
0.2587
rs10000037
BB
0.8667
0.9584754
1.010151
1
0.0459
rs10000041
AA
0.9013
0.03401489
0.9450093
0.0018
-0.3089
rs10000042
BB
0.743
0.9698865
0.9424725
1
-0.0088
rs10000049
AA
0.3682
0.04887905
0.9477791
0.0095
-0.4303
rs1000007
AB
0.7959
0.3547874
1.362876
0.3497
0.1843
rs10000073
AA
0.8822
0.0151819
0.5969284
0
-0.657
rs10000081
AA
0.8843
0.06290992
0.8862597
0.0215
0.1758
rs10000092
AA
0.8239
0.02304071
0.6152014
0
-0.3611
rs10000105
BB
0.8522
0.9633755
0.9516674
0.9964
-0.0975
rs10000119
BB
0.8816
0.9719859
1.109003
1
-0.1794
rs10000124
BB
0.7992
0.9785978
1.281054
1
-0.1903
rs10000154
BB
0.8964
0.971292
0.9289474
1
0.0257
rs1000016
AA
0.8463
0.01690168
1.641185
4.00E-04
0.1395
rs10000160
BB
0.8387
0.9446349
0.9645066
0.9936
-0.1464
rs10000169
BB
0.901
0.966159
0.9538325
1
-0.1001
Total number of rows:
716503
Table truncated, full table size
35856 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM2073115_3999143054_R08C01_Grn.idat.gz
4.8 Mb
(ftp)
(http)
IDAT
GSM2073115_3999143054_R08C01_Red.idat.gz
4.8 Mb
(ftp)
(http)
IDAT
Processed data included within Sample table
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