|
Status |
Public on Mar 21, 2016 |
Title |
Brain t4006, temporal cortex |
Sample type |
genomic |
|
|
Source name |
Normal temporal cortex
|
Organism |
Homo sapiens |
Characteristics |
tissue: Temporal cortex disease state: Normal
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA samples were isolated using Phenol-chloroform extraction protocol.
|
Label |
Cy3,Cy5
|
Label protocol |
According to manufacturers instructions.
|
|
|
Hybridization protocol |
Genomic DNA was hybridized according to manufacturers instructions.
|
Scan protocol |
Arrays were imaged using Illumina iScan according to manufacturer's specifications (Illumina Inc.).
|
Description |
Methylation data using Illumina 450K BeadChips from whole brain, neurons and glia are available for this brain
|
Data processing |
Data was extracted using GenomeStudio v2011.1 Genotyping Module (v1.9.4). All probes mapping to the X or Y chromosome were removed.
|
|
|
Submission date |
Mar 15, 2016 |
Last update date |
Mar 21, 2016 |
Contact name |
Benjamin Tycko |
E-mail(s) |
bejamintycko@hackensackmeridian.org
|
Phone |
5519963595
|
Organization name |
HUMC
|
Department |
Epigenetics
|
Street address |
40 prospect avenue
|
City |
hackensack |
State/province |
NJ |
ZIP/Postal code |
07601 |
Country |
USA |
|
|
Platform ID |
GPL18952 |
Series (2) |
GSE79254 |
Mechanisms and disease associations of haplotype-dependent allele specific DNA methylation: genotyping data for the identification of mQTL |
GSE79262 |
Mechanisms and disease associations of haplotype-dependent allele specific DNA methylation |
|