|
| Status |
Public on Jan 31, 2017 |
| Title |
MAQCB_2 |
| Sample type |
SRA |
| |
|
| Source name |
Human Brain Reference RNA, Thermo Fisher Scientific
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: Human Brain Reference RNA from Thermo Fisher Scientific
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Extracted by respectively Agilent Technologies and Thermo Fisher Scientific
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
Tophat-Cufflinks (Bowtie2 v2.1.0 Tophat v2.0.10 Cufflinks v2.1.1) all standard parameters
Tophat-HTSeq v0.5.4 all standard parameters
Kallisto v0.42.1 all standard parameters
Salmon v0.6.0 all standard parameters
Genome_build: Ensembl GRCh37, release 75
Supplementary_files_format_and_content: txt files
|
| |
|
| Submission date |
Jun 15, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Celine Everaert |
| E-mail(s) |
celine.everaert@ugent.be
|
| Organization name |
University Ghent
|
| Street address |
De Pintelaan 185
|
| City |
Ghent |
| ZIP/Postal code |
9000 |
| Country |
Belgium |
| |
|
| Platform ID |
GPL18573 |
| Series (1) |
| GSE83402 |
Benchmarking of RNA-sequencing analysis workflows using whole-transcriptome RT-qPCR expression data |
|
| Relations |
| BioSample |
SAMN05254829 |
| SRA |
SRX1847884 |
