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Sample GSM2343204 Query DataSets for GSM2343204
Status Public on Nov 08, 2016
Title small RNA-seq from Peyer's patch (ENCLB439POH)
Sample type SRA
 
Source name Homo sapiens Peyer's patch tissue male adult (54 years)
Organism Homo sapiens
Characteristics tissue_type: Peyer's patch
biomaterial_type: tissue
description: Small intestine aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS943XLR (SAMN05897718)
dev stage: adult
Sex: male
donor_id: ENCDO451RUA
age: 54 year
lab: Thomas Gingeras, CSHL
link: ENCBS943XLR at ENCODE; https://www.encodeproject.org/ENCBS943XLR/
link: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/6e0d2664-8993-44c1-b4db-e94cdc7309e3/@@download/attachment/LID296640.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description https://www.encodeproject.org/experiments/ENCSR091JNF/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's ileum tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR091JNF
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-08-05
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB439POH
size range: <200
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL18573
Series (1)
GSE88019 small RNA-seq from Peyer's patch (ENCSR091JNF)
Relations
BioSample SAMN05897718
SRA SRX2244935
Named Annotation GSM2343204_ENCFF318NQU_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343204_ENCFF559WNP_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343204_ENCFF829JKP_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343204_ENCFF108VRF_minus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343204_ENCFF044FYT_plus_strand_signal_of_unique_reads_hg19.bigWig 1.4 Mb (ftp)(http) BIGWIG
GSM2343204_ENCFF108VRF_minus_strand_signal_of_all_reads_GRCh38.bigWig 9.1 Mb (ftp)(http) BIGWIG
GSM2343204_ENCFF183SYJ_minus_strand_signal_of_unique_reads_hg19.bigWig 1.3 Mb (ftp)(http) BIGWIG
GSM2343204_ENCFF187DGZ_gene_quantifications_GRCh38.tsv.gz 287.5 Kb (ftp)(http) TSV
GSM2343204_ENCFF260HKU_gene_quantifications_hg19.tsv.gz 272.4 Kb (ftp)(http) TSV
GSM2343204_ENCFF318NQU_plus_strand_signal_of_unique_reads_GRCh38.bigWig 1.4 Mb (ftp)(http) BIGWIG
GSM2343204_ENCFF344GXH_minus_strand_signal_of_all_reads_hg19.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSM2343204_ENCFF559WNP_plus_strand_signal_of_all_reads_GRCh38.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSM2343204_ENCFF829JKP_minus_strand_signal_of_unique_reads_GRCh38.bigWig 1.3 Mb (ftp)(http) BIGWIG
GSM2343204_ENCFF959YMN_plus_strand_signal_of_all_reads_hg19.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSM2343204_ENCLB439POH_README.txt.gz 1019 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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