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Sample GSM2343608 Query DataSets for GSM2343608
Status Public on Nov 08, 2016
Title small RNA-seq from thyroid gland (ENCLB489WBR)
Sample type SRA
 
Source name Homo sapiens thyroid gland tissue female adult (53 years)
Organism Homo sapiens
Characteristics tissue_type: thyroid gland
biomaterial_type: tissue
description: Thyroid aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS207DLU (SAMN05896977)
age: 53 year
dev stage: adult
donor_id: ENCDO793LXB
Sex: female
lab: Thomas Gingeras, CSHL
link: ENCBS207DLU at ENCODE; https://www.encodeproject.org/ENCBS207DLU/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/30bc992f-d065-4304-bc12-925421227005/@@download/attachment/LID296657.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description https://www.encodeproject.org/experiments/ENCSR359CVC/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's thyroid gland tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR359CVC
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-05-23
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB489WBR
size range: <200
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL18573
Series (1)
GSE88218 small RNA-seq from thyroid gland (ENCSR359CVC)
Relations
BioSample SAMN05896977
SRA SRX2243989
Named Annotation GSM2343608_ENCFF571ZUT_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343608_ENCFF438PZJ_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343608_ENCFF260DGE_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343608_ENCFF433JFT_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343608_ENCFF260DGE_minus_strand_signal_of_all_reads_GRCh38.bigWig 3.4 Mb (ftp)(http) BIGWIG
GSM2343608_ENCFF267WSV_gene_quantifications_hg19.tsv.gz 265.0 Kb (ftp)(http) TSV
GSM2343608_ENCFF433JFT_minus_strand_signal_of_unique_reads_GRCh38.bigWig 877.2 Kb (ftp)(http) BIGWIG
GSM2343608_ENCFF438PZJ_plus_strand_signal_of_unique_reads_GRCh38.bigWig 973.8 Kb (ftp)(http) BIGWIG
GSM2343608_ENCFF571LZP_minus_strand_signal_of_all_reads_hg19.bigWig 3.8 Mb (ftp)(http) BIGWIG
GSM2343608_ENCFF571ZUT_plus_strand_signal_of_all_reads_GRCh38.bigWig 4.1 Mb (ftp)(http) BIGWIG
GSM2343608_ENCFF649HAM_minus_strand_signal_of_unique_reads_hg19.bigWig 947.4 Kb (ftp)(http) BIGWIG
GSM2343608_ENCFF773RKW_plus_strand_signal_of_all_reads_hg19.bigWig 3.9 Mb (ftp)(http) BIGWIG
GSM2343608_ENCFF845THX_gene_quantifications_GRCh38.tsv.gz 281.5 Kb (ftp)(http) TSV
GSM2343608_ENCFF897ELQ_plus_strand_signal_of_unique_reads_hg19.bigWig 1.0 Mb (ftp)(http) BIGWIG
GSM2343608_ENCLB489WBR_README.txt.gz 1016 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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