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Sample GSM2343824 Query DataSets for GSM2343824
Status Public on Nov 08, 2016
Title small RNA-seq from upper lobe of left lung (ENCLB483BRP)
Sample type SRA
 
Source name Homo sapiens upper lobe of left lung tissue male adult (37 years)
Organism Homo sapiens
Characteristics tissue_type: upper lobe of left lung
biomaterial_type: tissue
description: Lung tissue obtained from GTEx for the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS320PNF (SAMN05897083)
age: 37 year
dev stage: adult
donor_id: ENCDO845WKR
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS320PNF at ENCODE; https://www.encodeproject.org/ENCBS320PNF/
link: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/2319f3ec-e5c3-4b2e-a49d-77597115137c/@@download/attachment/LID296636.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description https://www.encodeproject.org/experiments/ENCSR539RDF/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR539RDF
assay title: small RNA-seq
assembly: hg19, GRCh38
encode release date: 2016-08-05
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB483BRP
size range: <200
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL18573
Series (1)
GSE88344 small RNA-seq from upper lobe of left lung (ENCSR539RDF)
Relations
BioSample SAMN05897083
SRA SRX2244218
Named Annotation GSM2343824_ENCFF894AYZ_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343824_ENCFF714QQZ_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343824_ENCFF058FPE_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343824_ENCFF052UUB_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343824_ENCFF052UUB_minus_strand_signal_of_unique_reads_GRCh38.bigWig 1.2 Mb (ftp)(http) BIGWIG
GSM2343824_ENCFF058FPE_minus_strand_signal_of_all_reads_GRCh38.bigWig 5.3 Mb (ftp)(http) BIGWIG
GSM2343824_ENCFF234RLJ_plus_strand_signal_of_unique_reads_hg19.bigWig 1.3 Mb (ftp)(http) BIGWIG
GSM2343824_ENCFF246OJQ_gene_quantifications_GRCh38.tsv.gz 290.1 Kb (ftp)(http) TSV
GSM2343824_ENCFF423YBV_plus_strand_signal_of_all_reads_hg19.bigWig 8.8 Mb (ftp)(http) BIGWIG
GSM2343824_ENCFF603COB_minus_strand_signal_of_all_reads_hg19.bigWig 8.8 Mb (ftp)(http) BIGWIG
GSM2343824_ENCFF611IOO_minus_strand_signal_of_unique_reads_hg19.bigWig 1.3 Mb (ftp)(http) BIGWIG
GSM2343824_ENCFF714QQZ_plus_strand_signal_of_all_reads_GRCh38.bigWig 8.9 Mb (ftp)(http) BIGWIG
GSM2343824_ENCFF849GKQ_gene_quantifications_hg19.tsv.gz 275.7 Kb (ftp)(http) TSV
GSM2343824_ENCFF894AYZ_plus_strand_signal_of_unique_reads_GRCh38.bigWig 1.2 Mb (ftp)(http) BIGWIG
GSM2343824_ENCLB483BRP_README.txt.gz 1019 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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