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Sample GSM2343943 Query DataSets for GSM2343943
Status Public on Nov 08, 2016
Title small RNA-seq from testis (ENCLB304YPH)
Sample type SRA
 
Source name Homo sapiens testis tissue male adult (54 years)
Organism Homo sapiens
Characteristics tissue_type: testis
biomaterial_type: tissue
description: Testis aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS255MJZ (SAMN05897027)
age: 54 year
dev stage: adult
donor_id: ENCDO451RUA
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS255MJZ at ENCODE; https://www.encodeproject.org/ENCBS255MJZ/
link: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/9b45a485-a010-4bbb-8948-7aae3bd3eef2/@@download/attachment/LID296656.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description https://www.encodeproject.org/experiments/ENCSR626GVP/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR626GVP
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-05-23
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB304YPH
size range: <200
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL18573
Series (1)
GSE88414 small RNA-seq from testis (ENCSR626GVP)
Relations
BioSample SAMN05897027
SRA SRX2244339
Named Annotation GSM2343943_ENCFF741CNB_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343943_ENCFF973BQQ_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343943_ENCFF132ODG_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343943_ENCFF408XMX_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343943_ENCFF016BSF_plus_strand_signal_of_all_reads_hg19.bigWig 9.4 Mb (ftp)(http) BIGWIG
GSM2343943_ENCFF132ODG_minus_strand_signal_of_all_reads_GRCh38.bigWig 9.1 Mb (ftp)(http) BIGWIG
GSM2343943_ENCFF231MYQ_gene_quantifications_hg19.tsv.gz 291.6 Kb (ftp)(http) TSV
GSM2343943_ENCFF408XMX_minus_strand_signal_of_unique_reads_GRCh38.bigWig 2.9 Mb (ftp)(http) BIGWIG
GSM2343943_ENCFF620YRY_gene_quantifications_GRCh38.tsv.gz 308.4 Kb (ftp)(http) TSV
GSM2343943_ENCFF741CNB_plus_strand_signal_of_all_reads_GRCh38.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSM2343943_ENCFF944YCS_plus_strand_signal_of_unique_reads_hg19.bigWig 3.1 Mb (ftp)(http) BIGWIG
GSM2343943_ENCFF961LZZ_minus_strand_signal_of_all_reads_hg19.bigWig 9.3 Mb (ftp)(http) BIGWIG
GSM2343943_ENCFF973BQQ_plus_strand_signal_of_unique_reads_GRCh38.bigWig 3.0 Mb (ftp)(http) BIGWIG
GSM2343943_ENCFF991HPX_minus_strand_signal_of_unique_reads_hg19.bigWig 3.0 Mb (ftp)(http) BIGWIG
GSM2343943_ENCLB304YPH_README.txt.gz 1022 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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