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Sample GSM2343963 Query DataSets for GSM2343963
Status Public on Nov 08, 2016
Title small RNA-seq from sigmoid colon (ENCLB608HYG)
Sample type SRA
 
Source name Homo sapiens sigmoid colon tissue female adult (53 years)
Organism Homo sapiens
Characteristics tissue_type: sigmoid colon
biomaterial_type: tissue
description: Sigmoid colon tissue aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS581JIS (SAMN05897338)
age: 53 year
dev stage: adult
donor_id: ENCDO793LXB
Sex: female
lab: Thomas Gingeras, CSHL
link: ENCBS581JIS at ENCODE; https://www.encodeproject.org/ENCBS581JIS/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/53b8d3f1-686e-41b2-b9f0-b0e9c2c66bbd/@@download/attachment/LID296505.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description https://www.encodeproject.org/experiments/ENCSR635SLB/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR635SLB
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-05-03
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB608HYG
size range: <200
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL18573
Series (1)
GSE88426 small RNA-seq from sigmoid colon (ENCSR635SLB)
Relations
BioSample SAMN05897338
SRA SRX2244377
Named Annotation GSM2343963_ENCFF524WQD_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343963_ENCFF329LRO_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343963_ENCFF928VUK_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343963_ENCFF162PMO_plus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343963_ENCFF162PMO_plus_strand_signal_of_all_reads_GRCh38.bigWig 4.6 Mb (ftp)(http) BIGWIG
GSM2343963_ENCFF329LRO_plus_strand_signal_of_unique_reads_GRCh38.bigWig 674.8 Kb (ftp)(http) BIGWIG
GSM2343963_ENCFF449VAP_gene_quantifications_GRCh38.tsv.gz 278.6 Kb (ftp)(http) TSV
GSM2343963_ENCFF524WQD_minus_strand_signal_of_unique_reads_GRCh38.bigWig 620.8 Kb (ftp)(http) BIGWIG
GSM2343963_ENCFF557QNZ_plus_strand_signal_of_all_reads_hg19.bigWig 4.2 Mb (ftp)(http) BIGWIG
GSM2343963_ENCFF586QDJ_minus_strand_signal_of_unique_reads_hg19.bigWig 666.8 Kb (ftp)(http) BIGWIG
GSM2343963_ENCFF871POI_plus_strand_signal_of_unique_reads_hg19.bigWig 993.0 Kb (ftp)(http) BIGWIG
GSM2343963_ENCFF928VUK_minus_strand_signal_of_all_reads_GRCh38.bigWig 4.0 Mb (ftp)(http) BIGWIG
GSM2343963_ENCFF960COY_minus_strand_signal_of_all_reads_hg19.bigWig 4.2 Mb (ftp)(http) BIGWIG
GSM2343963_ENCFF980YWZ_gene_quantifications_hg19.tsv.gz 261.7 Kb (ftp)(http) TSV
GSM2343963_ENCLB608HYG_README.txt.gz 1014 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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