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Sample GSM2344299 Query DataSets for GSM2344299
Status Public on Nov 08, 2016
Title small RNA-seq from uterus (ENCLB871CON)
Sample type SRA
 
Source name Homo sapiens uterus tissue female adult (51 year)
Organism Homo sapiens
Characteristics tissue_type: uterus
biomaterial_type: tissue
description: Uterus aliquot received by the Gingeras lab to conduct RNA-Seq assays on.
biosample encode accession: ENCBS887WTT (SAMN05897667)
dev stage: adult
Sex: female
donor_id: ENCDO271OUW
age: 51 year
lab: Thomas Gingeras, CSHL
link: ENCBS887WTT at ENCODE; https://www.encodeproject.org/ENCBS887WTT/
link: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/b7eaeeaa-38a6-44f9-bb0c-a1c0411f42f9/@@download/attachment/LID296658.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description https://www.encodeproject.org/experiments/ENCSR887HNW/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's uterus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR887HNW
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-05-03
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB871CON
size range: <200
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL18573
Series (1)
GSE88624 small RNA-seq from uterus (ENCSR887HNW)
Relations
BioSample SAMN05897667
SRA SRX2244707
Named Annotation GSM2344299_ENCFF390WUJ_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344299_ENCFF139IJQ_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2344299_ENCFF470PSJ_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2344299_ENCFF822OMU_plus_strand_signal_of_all_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2344299_ENCFF139IJQ_minus_strand_signal_of_all_reads_GRCh38.bigWig 3.0 Mb (ftp)(http) BIGWIG
GSM2344299_ENCFF286CBW_plus_strand_signal_of_all_reads_hg19.bigWig 3.1 Mb (ftp)(http) BIGWIG
GSM2344299_ENCFF390WUJ_minus_strand_signal_of_unique_reads_GRCh38.bigWig 518.9 Kb (ftp)(http) BIGWIG
GSM2344299_ENCFF470PSJ_plus_strand_signal_of_unique_reads_GRCh38.bigWig 767.1 Kb (ftp)(http) BIGWIG
GSM2344299_ENCFF541WLU_plus_strand_signal_of_unique_reads_hg19.bigWig 814.8 Kb (ftp)(http) BIGWIG
GSM2344299_ENCFF654WKZ_gene_quantifications_GRCh38.tsv.gz 273.4 Kb (ftp)(http) TSV
GSM2344299_ENCFF665VXQ_minus_strand_signal_of_unique_reads_hg19.bigWig 753.9 Kb (ftp)(http) BIGWIG
GSM2344299_ENCFF752YWK_minus_strand_signal_of_all_reads_hg19.bigWig 3.1 Mb (ftp)(http) BIGWIG
GSM2344299_ENCFF811ONI_gene_quantifications_hg19.tsv.gz 256.4 Kb (ftp)(http) TSV
GSM2344299_ENCFF822OMU_plus_strand_signal_of_all_reads_GRCh38.bigWig 3.5 Mb (ftp)(http) BIGWIG
GSM2344299_ENCLB871CON_README.txt.gz 1.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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