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Sample GSM27149 Query DataSets for GSM27149
Status Public on Nov 05, 2004
Title HNF1b_2b+
Sample type RNA
 
Source name INS-1 cell line #2b with induced HNF1b
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description A rat insulinoma cell line (INS-1) was generated that contains a FRT site for FLP recombinase mediated site specific integration of specific genes. In addition, the line contains the tetracycline repressor allowing tetracycline (tet) induction of the introduced gene. By comparing the gene expression profiles of uninduced and tet-induced cells, target genes of introduced transcription factors can be identified. This entry corresponds to the RNA isolated from tet-induced INS-1 cell line #2b containing hepatocyte nuclear factor-1b (HNF1b).
Keywords = INS-1
Keywords = beta-cell
Keywords = HNF1b
Keywords = tetracycline
Keywords = FRT
 
Submission date Jul 21, 2004
Last update date May 27, 2005
Contact name Ludger Klein-Hitpass
E-mail(s) ludger.klein-hitpass@uni-essen.de
Phone +49 201 723 85552
Organization name Institut fuer Zellbiologie
Department Universitaetsklinikum
Lab BioChip Lab
Street address Virchowstr. 173
City Essen
ZIP/Postal code D-45122
Country Germany
 
Platform ID GPL341
Series (3)
GSE1589 Targets of HNF1b, HNF4a2 and HNF6 in INS-1 cells
GSE1590 Targets of HNF1b mutants in INS-1
GSE6428 HNF1b, HNF4a2 and HNF6 targets

Data table header descriptions
ID_REF
VALUE ‘signal’, a measure of the abundance of the transcript
ABS_CALL the call in an absolute analysis that indicates whether a transcript is reliably detected (Present, P) or not detected (Absent, A)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 280.6 P 0.015183
AFFX-BioB-M_at 502.4 P 0.000297
AFFX-BioB-3_at 154.9 P 0.046482
AFFX-BioC-5_at 660.9 P 0.000127
AFFX-BioC-3_at 382.9 P 0.000044
AFFX-BioDn-5_at 884.6 P 0.000754
AFFX-BioDn-3_at 4344 P 0.000446
AFFX-CreX-5_at 7297.8 P 0.000044
AFFX-CreX-3_at 14325.8 P 0.000044
AFFX-DapX-5_at 125.5 P 0.000662
AFFX-DapX-M_at 283.9 P 0.006187
AFFX-DapX-3_at 279.6 P 0.000972
AFFX-LysX-5_at 773.6 P 0.000044
AFFX-LysX-M_at 1117.8 P 0.00007
AFFX-LysX-3_at 1948.9 P 0.00006
AFFX-PheX-5_at 4214.4 P 0.000044
AFFX-PheX-M_at 5207.7 P 0.000044
AFFX-PheX-3_at 5354.3 P 0.000044
AFFX-ThrX-5_at 491.3 P 0.000052
AFFX-ThrX-M_at 701.9 P 0.00007

Total number of rows: 15923

Table truncated, full table size 432 Kbytes.




Supplementary data files not provided

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