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Sample GSM27153 Query DataSets for GSM27153
Status Public on Nov 05, 2004
Title HNF4a2_2+
Sample type RNA
 
Source name INS-1 cell line #2 with induced HNF4a2
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description A rat insulinoma cell line (INS-1) was generated that contains a FRT site for FLP recombinase mediated site specific integration of specific genes. In addition, the line contains the tetracycline repressor allowing tetracycline (tet) induction of the introduced gene. By comparing the gene expression profiles of uninduced and induced cells, target genes of introduced transcription factor can be identified. This entry corresponds to the RNA isolated from tet-induced INS-1 cell line #2 containing hepatocyte nuclear factor-4a2 (HNF4a2).
Keywords = INS-1
Keywords = beta-cell
Keywords = HNF4a
Keywords = tetracycline
Keywords = FRT
 
Submission date Jul 21, 2004
Last update date May 27, 2005
Contact name Ludger Klein-Hitpass
E-mail(s) ludger.klein-hitpass@uni-essen.de
Phone +49 201 723 85552
Organization name Institut fuer Zellbiologie
Department Universitaetsklinikum
Lab BioChip Lab
Street address Virchowstr. 173
City Essen
ZIP/Postal code D-45122
Country Germany
 
Platform ID GPL341
Series (2)
GSE1589 Targets of HNF1b, HNF4a2 and HNF6 in INS-1 cells
GSE6428 HNF1b, HNF4a2 and HNF6 targets

Data table header descriptions
ID_REF
VALUE ‘signal’, a measure of the abundance of the transcript
ABS_CALL ‘signal’, a measure of the abundance of the transcript
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 372 A 0.095667
AFFX-BioB-M_at 259.8 P 0.00844
AFFX-BioB-3_at 136.1 A 0.139482
AFFX-BioC-5_at 574.1 P 0.001593
AFFX-BioC-3_at 279.6 P 0.000662
AFFX-BioDn-5_at 536.8 P 0.00844
AFFX-BioDn-3_at 3630.4 P 0.000754
AFFX-CreX-5_at 6450.8 P 0.000044
AFFX-CreX-3_at 11057.6 P 0.000044
AFFX-DapX-5_at 160.2 P 0.01667
AFFX-DapX-M_at 286.8 P 0.018281
AFFX-DapX-3_at 254.1 P 0.036569
AFFX-LysX-5_at 687.7 P 0.000044
AFFX-LysX-M_at 1073.3 P 0.000446
AFFX-LysX-3_at 1803.9 P 0.00007
AFFX-PheX-5_at 3345.6 P 0.000044
AFFX-PheX-M_at 3547.8 P 0.000044
AFFX-PheX-3_at 4508.1 P 0.000044
AFFX-ThrX-5_at 336.1 P 0.00141
AFFX-ThrX-M_at 534 P 0.000754

Total number of rows: 15923

Table truncated, full table size 433 Kbytes.




Supplementary data files not provided

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