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Sample GSM338465 Query DataSets for GSM338465
Status Public on Dec 31, 2008
Title thu1_naive_CD8
Sample type RNA
 
Source name thu_naive_CD8
Organism Mus musculus
Characteristics C57BL/6, Female, 8-12weeks,
Spleen, excised, 60min
Treatment protocol anti-CD4, anti-CD8, and anti-CD44 staining
Growth protocol RPMI+10 FCS
Extracted molecule total RNA
Extraction protocol RNeasy plus Mini kit (Qiagen)
Label biotin
Label protocol Affymetrix Mouse Exon Array labeling system
 
Hybridization protocol Affymetrix Gene Chip Fluidics station 450
Scan protocol Affymetrix GCS3000 7G
Description exon-level analysis
Data processing Exon- and gene-level data were generated using Partek Genomic Suite 6.3 software, with the defult algorithm of RMA.
 
Submission date Oct 31, 2008
Last update date Jan 04, 2012
Contact name Zuopeng Wu
E-mail(s) zuopeng.wu@anu.edu.au
Phone +61-2-61251392
Organization name John Curtin School of Medical Research
Department Dept. of Immunology & Genetics
Lab Immunogenomics Lab
Street address Garren Rd
City Canberra
State/province ACT
ZIP/Postal code 0200
Country Australia
 
Platform ID GPL6193
Series (1)
GSE13416 Memory T cell RNA rearrangement by hn RNP LL
Relations
Alternative to GSM338513 (gene-level analysis)

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304927 4.8464694023132
4304928 12.093470573425
4304938 2.9704158306122
4304943 2.9512023925781
4304945 9.3394060134888
4304949 8.833028793335
4304956 6.4845724105835
4304972 5.3295478820801
4304978 3.0276565551758
4304981 6.7224955558777
4304986 3.8262042999268
4304997 3.719619512558
4305011 4.9395241737366
4305019 3.9628658294678
4305028 7.3355159759521
4305036 6.4069786071777
4305039 3.2540643215179
4305048 8.075325012207
4305053 3.1417171955109
4305054 8.3557758331299

Total number of rows: 193380

Table truncated, full table size 4511 Kbytes.




Supplementary file Size Download File type/resource
GSM338465_thu1_naive_CD8.CEL 62.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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