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Platform GPL6193 Query DataSets for GPL6193
Status Public on Nov 30, 2007
Title [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

#%create_date=Wed Mar 11 17:52:51 2009 PDT
#%chip_type=MoEx-1_0-st-v1
#%lib_set_name=MoEx-1_0-st
#%lib_set_version=v1
#%genome-species=Mus musculus
#%genome-version=mm9
#%genome-version-ucsc=mm9
#%genome-version-ncbi=37
#%genome-version-create_date=2007-07
#%netaffx-annotation-date=2009-03-16
#%netaffx-annotation-netaffx-build=28
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=moexon-st
http://www.affymetrix.com/support/technical/libraryfilesmain.affx
Submission date Nov 30, 2007
Last update date Mar 03, 2017
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (1566) GSM267176, GSM267177, GSM267178, GSM267179, GSM267180, GSM267181 
Series (122)
GSE10599 SMA mouse tissue exon array analysis
GSE11150 Hypothalamic gene expression data from Mecp2-null and MECP2-transgenic mice
GSE12184 Exon analysis of HCV tumor promoting effect
Relations
Affiliated with GPL6096

Data table header descriptions
ID exon probeset_id
GB_LIST GenBank and RefSeq Accessions from mrna_assignment column
SPOT_ID genomic location of the transcript cluster in the version of the genome assembly used at annotation time. Coordinates are standard 1-based (length=stop-start+1).
seqname chromosome
RANGE_GB NCBI RefSeq for chromosome of current build
RANGE_STRAND strand (+|-)
RANGE_START start (integer). Coordinates are standard 1-based (length=stop-start+1).
RANGE_STOP stop (integer). Coordinates are standard 1-based (length=stop-start+1).
probe_count Total number of probes in this probe set
transcript_cluster_id Unique identifier for the transcript cluster containing this probe set.
exon_id Unique identifier for the exon cluster containing this probe set.
psr_id Unique identifier for the probe selection region containing this probe set.
gene_assignment Gene name(s) for each assigned mRNA for mRNAs that corresponds to known genes.
mrna_assignment Public mRNAs that should be detected by this probe set based on sequence alignment determined at the time of the current NetAffx annotation update.
level Level of design-time annotation support for the probe set.
probeset_type Array design category of the probe set.

Data table
ID GB_LIST SPOT_ID seqname RANGE_GB RANGE_STRAND RANGE_START RANGE_STOP probe_count transcript_cluster_id exon_id psr_id gene_assignment mrna_assignment level probeset_type
4304920 chr10:85163063-85163095 chr10 NC_000076.5 + 85163063 85163095 4 6769481 77732 116180572 --- --- full main
4304921 chr7:36287529-36287565 chr7 NC_000073.5 - 36287529 36287565 3 6966493 763420 115944970 --- --- full main
4304922 chr17:17720489-17720626 chr17 NC_000083.5 - 17720489 17720626 4 6854031 371630 114457768 --- --- extended main
4304923 chr16:92065941-92065968 chr16 NC_000082.5 + 92065941 92065968 4 6843207 333679 114136397 --- GENSCAN00000011727 // chr16 // 100 // 4 // 4 // 0 full main
4304925 chr3:57907260-57907346 chr3 NC_000069.5 + 57907260 57907346 4 6897740 525093 115361124 --- --- extended main
4304927 NM_001003668, BC139321 chr15:101265930-101265961 chr15 NC_000081.5 - 101265930 101265961 4 6838637 317777 113736565 NM_001003668 // Krt83 /// BC139321 // Krt83 /// ENSMUST00000108897 // Krt83 /// ENSMUST00000081945 // Krt83 NM_001003668 // chr15 // 100 // 4 // 4 // 0 /// BC139321 // chr15 // 100 // 4 // 4 // 0 /// ENSMUST00000108897 // chr15 // 100 // 4 // 4 // 0 /// ENSMUST00000081945 // chr15 // 100 // 4 // 4 // 0 core main
4304928 NM_025407, BC030064 chr9:108851489-108851529 chr9 NC_000075.5 + 108851489 108851529 4 6992377 853394 114604482 NM_025407 // Uqcrc1 /// BC030064 // Uqcrc1 /// ENSMUST00000026743 // Uqcrc1 NM_025407 // chr9 // 100 // 4 // 4 // 0 /// BC030064 // chr9 // 100 // 4 // 4 // 0 /// ENSMUST00000026743 // chr9 // 100 // 4 // 4 // 0 core main
4304929 NM_008236, BC138112 chr4:151533788-151533816 chr4 NC_000070.5 + 151533788 151533816 4 6919009 595553 114307324 NM_008236 // Hes2 /// BC138112 // Hes2 /// ENSMUST00000030782 // Hes2 NM_008236 // chr4 // 100 // 4 // 4 // 0 /// BC138112 // chr4 // 100 // 4 // 4 // 0 /// ENSMUST00000030782 // chr4 // 100 // 4 // 4 // 0 extended main
4304930 chr17:54999505-54999648 chr17 NC_000083.5 + 54999505 54999648 4 6851146 362106 114430023 --- --- extended main
4304931 chr14:35372193-35372389 chr14 NC_000080.5 - 35372193 35372389 4 6823891 266564 115859192 --- --- full main
4304932 chr3:30326441-30326528 chr3 NC_000069.5 - 30326441 30326528 4 6903899 546222 115423781 --- --- full main
4304933 Not currently mapped to latest genome
4304934 chr6:94801497-94801576 chr6 NC_000072.5 - 94801497 94801576 4 6955701 722964 114801365 --- --- full main
4304935 chr10:7956449-7956503 chr10 NC_000076.5 - 7956449 7956503 4 6771995 86666 116206759 --- --- full main
4304937 NM_029536, BC113184 chrX:93910413-93910538 chrX NC_000086.6 + 93910413 93910538 4 7012702 912249 116569738 NM_029536 // Gpr165 /// BC113184 // Gpr165 /// ENSMUST00000033554 // Gpr165 NM_029536 // chrX // 100 // 4 // 4 // 0 /// BC113184 // chrX // 100 // 4 // 4 // 0 /// ENSMUST00000033554 // chrX // 100 // 4 // 4 // 0 extended main
4304938 NM_173762, AY493378 chr3:134905050-134905153 chr3 NC_000069.5 + 134905050 134905153 4 6901592 538559 115401498 NM_173762 // Cenpe /// AY493378 // Cenpe /// ENSMUST00000062893 // Cenpe NM_173762 // chr3 // 100 // 4 // 4 // 0 /// AY493378 // chr3 // 100 // 4 // 4 // 0 /// ENSMUST00000062893 // chr3 // 100 // 4 // 4 // 0 core main
4304939 chr10:37384112-37384138 chr10 NC_000076.5 - 37384112 37384138 3 6773323 91456 116220225 --- --- full main
4304940 chr11:47022250-47022349 chr11 NC_000077.5 + 47022250 47022349 4 6780592 115599 115518304 --- GENSCAN00000009377 // chr11 // 100 // 4 // 4 // 0 full main
4304941 NM_145378, DQ888308 chr2:119867245-119867351 chr2 NC_000068.6 + 119867245 119867351 4 6880556 465198 114908126 NM_145378 // Pla2g4b /// DQ888308 // Pla2g4b /// ENSMUST00000110759 // Pla2g4b /// ENSMUST00000110759 // Jmjd7 /// ENSMUST00000044497 // Pla2g4b /// ENSMUST00000110761 // Pla2g4b NM_145378 // chr2 // 100 // 4 // 4 // 0 /// DQ888308 // chr2 // 100 // 4 // 4 // 0 /// ENSMUST00000110759 // chr2 // 100 // 4 // 4 // 0 /// ENSMUST00000044497 // chr2 // 100 // 4 // 4 // 0 /// ENSMUST00000110761 // chr2 // 100 // 4 // 4 // 0 extended main
4304942 Not currently mapped to latest genome

Total number of rows: 1256831

Table truncated, full table size 239820 Kbytes.




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