|
| Status |
Public on Dec 13, 2018 |
| Title |
Patient 5 |
| Sample type |
genomic |
| |
|
| Source name |
Prostate Cancer
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: Prostate Cancer
last f/u: 7-Aug-17
abir. start date: 23-Sep-15
failure (yes=1, no=0): 0
pfs (months): 22.467
logpsa (at abir start): 2.49
gleason_cat: 2.00
genotype(rs12422149): AB
genotype(rs1789693): AA
tissue: whole blood
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Extraction of genomic DNA from separated leukocytes was performed using ice-cold alkaline phenol-chloroform extraction and precipitation with isopropanol followed by ethanol.
|
| Label |
C-Bio and A-DNP
|
| Label protocol |
Standard Illumina labelling protocol
|
| |
|
| Hybridization protocol |
Standard Illumina hybridisation protocol
|
| Scan protocol |
Standard Illumina scanning protocol for BeadChip Arrays
|
| Description |
Genomic DNA extracted from whole blood was genotyped using HumanOmniExpress-24 v1 BeadChip (Illumina).
SAMPLE 5
|
| Data processing |
The scanned data files were processed by GenomeStudio Genotyping using the cluster file HumanOmniExpress_24v1.0 (GPL21168), HumanOmniExpress_24v1.1 (GPL22678), and InfiniumOmniExpress_24v1.2 (Platform_InfiniumOmniExpress-24v1-2_A1.txt) all provided by Illumina.
Genotype: AA,AB,BB,or NC (no call)
|
| |
|
| Submission date |
Dec 12, 2018 |
| Last update date |
Dec 13, 2018 |
| Contact name |
Roberto Henrique Nussenzveig |
| Organization name |
University of Utah/Huntsman Cancer Institute
|
| Department |
Oncology
|
| Street address |
2000 Circle of Hope
|
| City |
Salt Lake City |
| State/province |
Utah |
| ZIP/Postal code |
84101 |
| Country |
USA |
| |
|
| Platform ID |
GPL21168 |
| Series (1) |
| GSE123695 |
Germline variant in SLCO2B1 and response to abiraterone acetate plus prednisone (AA) in new onset metastatic castration-resistant prostate cancer (mCRPC) |
|
