|
Status |
Public on Dec 13, 2018 |
Title |
Patient 20 |
Sample type |
genomic |
|
|
Source name |
Prostate Cancer
|
Organism |
Homo sapiens |
Characteristics |
disease state: Prostate Cancer abir. start date: 30-Jul-13 abir. failure date: 22-Oct-15 failure (yes=1, no=0): 1 pfs (months): 26.733 logpsa (at abir start): 0.41 gleason_cat: 4.00 genotype(rs12422149): BB genotype(rs1789693): AB tissue: whole blood
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Extraction of genomic DNA from separated leukocytes was performed using ice-cold alkaline phenol-chloroform extraction and precipitation with isopropanol followed by ethanol.
|
Label |
C-Bio and A-DNP
|
Label protocol |
Standard Illumina labelling protocol
|
|
|
Hybridization protocol |
Standard Illumina hybridisation protocol
|
Scan protocol |
Standard Illumina scanning protocol for BeadChip Arrays
|
Description |
Genomic DNA extracted from whole blood was genotyped using HumanOmniExpress-24 v1 BeadChip (Illumina). SAMPLE 20
|
Data processing |
The scanned data files were processed by GenomeStudio Genotyping using the cluster file HumanOmniExpress_24v1.0 (GPL21168), HumanOmniExpress_24v1.1 (GPL22678), and InfiniumOmniExpress_24v1.2 (Platform_InfiniumOmniExpress-24v1-2_A1.txt) all provided by Illumina. Genotype: AA,AB,BB,or NC (no call)
|
|
|
Submission date |
Dec 12, 2018 |
Last update date |
Dec 13, 2018 |
Contact name |
Roberto Henrique Nussenzveig |
Organization name |
University of Utah/Huntsman Cancer Institute
|
Department |
Oncology
|
Street address |
2000 Circle of Hope
|
City |
Salt Lake City |
State/province |
Utah |
ZIP/Postal code |
84101 |
Country |
USA |
|
|
Platform ID |
GPL21168 |
Series (1) |
GSE123695 |
Germline variant in SLCO2B1 and response to abiraterone acetate plus prednisone (AA) in new onset metastatic castration-resistant prostate cancer (mCRPC) |
|