NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM400399 Query DataSets for GSM400399
Status Public on May 08, 2009
Title cerebral cortex 4
Sample type RNA
 
Source name cerebral_cortex
Organism Mus musculus
Characteristics tissue: cerebral cortex
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description cerebral_cortex
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.499861
4304921 2.71864
4304922 3.098265
4304923 6.752348
4304925 7.055256
4304927 3.285253
4304928 12.203739
4304929 10.386678
4304930 3.274324
4304931 3.571408
4304932 4.074439
4304933 4.834781
4304934 3.11051
4304935 3.110858
4304937 6.404293
4304938 2.699938
4304939 2.069718
4304940 4.849739
4304941 4.340418
4304942 8.468853

Total number of rows: 1201338

Table truncated, full table size 19838 Kbytes.




Supplementary file Size Download File type/resource
GSM400399.CEL.gz 39.1 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap