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Sample GSM400405 Query DataSets for GSM400405
Status Public on May 08, 2009
Title intestine large 10
Sample type RNA
 
Source name intestine_large
Organism Mus musculus
Characteristics tissue: intestine large
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description intestine_large
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.309352
4304921 2.791857
4304922 5.44021
4304923 8.099415
4304925 6.920669
4304927 4.474463
4304928 12.727281
4304929 10.871765
4304930 3.740571
4304931 3.925493
4304932 7.08493
4304933 6.345846
4304934 2.899665
4304935 4.22127
4304937 2.826913
4304938 4.356053
4304939 2.330003
4304940 3.195345
4304941 5.398178
4304942 8.044183

Total number of rows: 1201338

Table truncated, full table size 19840 Kbytes.




Supplementary file Size Download File type/resource
GSM400405.CEL.gz 38.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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