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Sample GSM400406 Query DataSets for GSM400406
Status Public on May 08, 2009
Title intestine large 11
Sample type RNA
 
Source name intestine_large
Organism Mus musculus
Characteristics tissue: intestine large
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description intestine_large
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 4.193883
4304921 2.048184
4304922 4.537125
4304923 8.038468
4304925 7.491414
4304927 3.540309
4304928 12.791827
4304929 10.125432
4304930 4.254156
4304931 2.906619
4304932 6.868476
4304933 3.496646
4304934 3.148113
4304935 2.494214
4304937 3.009876
4304938 3.375744
4304939 2.230693
4304940 3.037087
4304941 5.686465
4304942 7.863205

Total number of rows: 1201338

Table truncated, full table size 19839 Kbytes.




Supplementary file Size Download File type/resource
GSM400406.CEL.gz 38.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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