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Sample GSM400412 Query DataSets for GSM400412
Status Public on May 08, 2009
Title prostate 17
Sample type RNA
 
Source name prostate
Organism Mus musculus
Characteristics tissue: prostate
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description prostate
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 1.912953
4304921 3.036939
4304922 3.073612
4304923 7.997809
4304925 8.179988
4304927 3.689074
4304928 11.764124
4304929 10.804817
4304930 3.488179
4304931 4.323542
4304932 4.291622
4304933 2.200083
4304934 4.426991
4304935 4.207647
4304937 5.231006
4304938 2.143733
4304939 2.756491
4304940 3.599484
4304941 4.608154
4304942 7.503502

Total number of rows: 1201338

Table truncated, full table size 19837 Kbytes.




Supplementary file Size Download File type/resource
GSM400412.CEL.gz 37.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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