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Sample GSM400417 Query DataSets for GSM400417
Status Public on May 08, 2009
Title intestine small 22
Sample type RNA
 
Source name intestine_small
Organism Mus musculus
Characteristics tissue: intestine small
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description intestine_small
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.018853
4304921 2.598697
4304922 2.960741
4304923 5.623781
4304925 5.722889
4304927 3.085453
4304928 12.892818
4304929 10.748625
4304930 4.988101
4304931 4.833005
4304932 5.827646
4304933 4.723244
4304934 4.259081
4304935 2.537003
4304937 2.140654
4304938 5.221329
4304939 2.403406
4304940 2.571673
4304941 4.669923
4304942 8.182329

Total number of rows: 1201338

Table truncated, full table size 19837 Kbytes.




Supplementary file Size Download File type/resource
GSM400417.CEL.gz 37.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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