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Sample GSM400433 Query DataSets for GSM400433
Status Public on May 08, 2009
Title testis 38
Sample type RNA
 
Source name testis
Organism Mus musculus
Characteristics tissue: testis
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description testis
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 5.562146
4304921 6.625955
4304922 2.905491
4304923 6.41749
4304925 3.888524
4304927 2.364498
4304928 12.944943
4304929 9.605509
4304930 5.322159
4304931 3.597059
4304932 3.948117
4304933 4.581364
4304934 3.45389
4304935 2.970664
4304937 3.584321
4304938 6.181883
4304939 1.966513
4304940 3.633862
4304941 4.450247
4304942 7.91265

Total number of rows: 1201338

Table truncated, full table size 19841 Kbytes.




Supplementary file Size Download File type/resource
GSM400433.CEL.gz 40.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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