NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM400434 Query DataSets for GSM400434
Status Public on May 08, 2009
Title mammary gland non-lactating 39
Sample type RNA
 
Source name mammary_gland_non-lactating
Organism Mus musculus
Characteristics tissue: mammary gland non-lactating
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description mammary_gland_non-lactating
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.49087
4304921 3.220774
4304922 5.179311
4304923 7.163361
4304925 6.029849
4304927 2.518547
4304928 12.605702
4304929 10.577448
4304930 3.379784
4304931 2.470741
4304932 4.898486
4304933 7.050016
4304934 3.312021
4304935 4.498729
4304937 3.450676
4304938 3.616951
4304939 1.941616
4304940 3.313329
4304941 5.407612
4304942 8.00782

Total number of rows: 1201338

Table truncated, full table size 19840 Kbytes.




Supplementary file Size Download File type/resource
GSM400434.CEL.gz 39.7 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap