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Sample GSM400435 Query DataSets for GSM400435
Status Public on May 08, 2009
Title mammary gland non-lactating 40
Sample type RNA
 
Source name mammary_gland_non-lactating
Organism Mus musculus
Characteristics tissue: mammary gland non-lactating
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description mammary_gland_non-lactating
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.07793
4304921 2.878694
4304922 4.297975
4304923 6.215646
4304925 9.634298
4304927 3.169341
4304928 12.722838
4304929 10.363556
4304930 4.17643
4304931 4.686132
4304932 4.851927
4304933 5.455351
4304934 4.564832
4304935 3.368445
4304937 2.932337
4304938 2.797368
4304939 1.93786
4304940 3.778751
4304941 5.450306
4304942 8.743423

Total number of rows: 1201338

Table truncated, full table size 19840 Kbytes.




Supplementary file Size Download File type/resource
GSM400435.CEL.gz 39.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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