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Sample GSM400438 Query DataSets for GSM400438
Status Public on May 08, 2009
Title macrophage peritoneal LPS thioglycollate 1hrs 43
Sample type RNA
 
Source name macrophage_peritoneal_LPS_thioglycollate_1hrs
Organism Mus musculus
Characteristics cell type: macrophage peritoneal LPS thioglycollate 1hrs
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description macrophage_peritoneal_LPS_thioglycollate_1hrs
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.15562
4304921 2.18598
4304922 3.315333
4304923 6.767185
4304925 9.629872
4304927 3.722328
4304928 11.62343
4304929 10.219794
4304930 3.767981
4304931 3.978341
4304932 4.78269
4304933 4.831321
4304934 3.135117
4304935 2.779071
4304937 4.453785
4304938 2.629764
4304939 1.920782
4304940 3.078279
4304941 4.62228
4304942 8.448454

Total number of rows: 1201338

Table truncated, full table size 19841 Kbytes.




Supplementary file Size Download File type/resource
GSM400438.CEL.gz 40.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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