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Sample GSM400449 Query DataSets for GSM400449
Status Public on May 08, 2009
Title macrophage bone marrow 2hr LPS 54
Sample type RNA
 
Source name macrophage_bone_marrow_2hr_LPS
Organism Mus musculus
Characteristics cell type: macrophage bone marrow 2hr LPS
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description macrophage_bone_marrow_2hr_LPS
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.158559
4304921 1.919399
4304922 3.559714
4304923 5.041561
4304925 9.199431
4304927 3.259379
4304928 12.213092
4304929 9.692498
4304930 4.001515
4304931 3.593782
4304932 4.384397
4304933 3.871853
4304934 3.791122
4304935 2.644102
4304937 3.402752
4304938 6.993286
4304939 3.086324
4304940 2.472438
4304941 4.180587
4304942 8.083043

Total number of rows: 1201338

Table truncated, full table size 19843 Kbytes.




Supplementary file Size Download File type/resource
GSM400449.CEL.gz 38.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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