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Sample GSM400461 Query DataSets for GSM400461
Status Public on May 08, 2009
Title min6 66
Sample type RNA
 
Source name min6
Organism Mus musculus
Characteristics cell line: min6
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description min6
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.869387
4304921 2.338262
4304922 3.5405
4304923 4.394856
4304925 7.607919
4304927 3.165299
4304928 11.424826
4304929 10.015814
4304930 3.901553
4304931 3.57401
4304932 4.596382
4304933 5.046521
4304934 3.689378
4304935 4.284522
4304937 3.092436
4304938 6.926534
4304939 1.74807
4304940 4.28724
4304941 4.236454
4304942 8.358332

Total number of rows: 1201338

Table truncated, full table size 19839 Kbytes.




Supplementary file Size Download File type/resource
GSM400461.CEL.gz 38.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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