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Sample GSM400472 Query DataSets for GSM400472
Status Public on May 08, 2009
Title bone marrow 77
Sample type RNA
 
Source name bone_marrow
Organism Mus musculus
Characteristics tissue: bone marrow
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description bone_marrow
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.14628
4304921 2.471711
4304922 5.405365
4304923 6.049922
4304925 8.91696
4304927 2.70358
4304928 11.820888
4304929 9.46486
4304930 3.213901
4304931 3.704151
4304932 4.748907
4304933 5.323869
4304934 3.742102
4304935 2.458791
4304937 2.855157
4304938 7.594741
4304939 1.776313
4304940 4.420483
4304941 4.810252
4304942 8.128281

Total number of rows: 1201338

Table truncated, full table size 19843 Kbytes.




Supplementary file Size Download File type/resource
GSM400472.CEL.gz 39.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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