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Sample GSM400473 Query DataSets for GSM400473
Status Public on May 08, 2009
Title bone marrow 78
Sample type RNA
 
Source name bone_marrow
Organism Mus musculus
Characteristics tissue: bone marrow
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description bone_marrow
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 1.701215
4304921 1.954399
4304922 3.602644
4304923 6.542492
4304925 7.110064
4304927 3.371674
4304928 12.056526
4304929 10.36181
4304930 3.438838
4304931 3.323371
4304932 4.039871
4304933 5.958944
4304934 2.420571
4304935 2.703435
4304937 2.770414
4304938 8.00512
4304939 2.228789
4304940 5.063247
4304941 5.347746
4304942 7.758809

Total number of rows: 1201338

Table truncated, full table size 19842 Kbytes.




Supplementary file Size Download File type/resource
GSM400473.CEL.gz 39.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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