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Sample GSM400474 Query DataSets for GSM400474
Status Public on May 08, 2009
Title spinal cord 79
Sample type RNA
 
Source name spinal_cord
Organism Mus musculus
Characteristics tissue: spinal cord
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description spinal_cord
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 3.279702
4304921 2.414453
4304922 3.285488
4304923 5.592839
4304925 8.86049
4304927 3.577568
4304928 12.747256
4304929 10.124071
4304930 3.173641
4304931 3.421946
4304932 4.586493
4304933 4.975647
4304934 2.46502
4304935 3.388975
4304937 7.63438
4304938 2.506781
4304939 1.941616
4304940 4.085938
4304941 5.182906
4304942 8.148112

Total number of rows: 1201338

Table truncated, full table size 19840 Kbytes.




Supplementary file Size Download File type/resource
GSM400474.CEL.gz 38.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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