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Sample GSM400475 Query DataSets for GSM400475
Status Public on May 08, 2009
Title spinal cord 80
Sample type RNA
 
Source name spinal_cord
Organism Mus musculus
Characteristics tissue: spinal cord
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description spinal_cord
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.225168
4304921 1.981338
4304922 5.421351
4304923 6.199628
4304925 8.283798
4304927 2.629286
4304928 12.794655
4304929 10.369948
4304930 4.076068
4304931 3.547777
4304932 4.222681
4304933 5.729337
4304934 3.327585
4304935 3.969872
4304937 7.837771
4304938 2.897245
4304939 2.235964
4304940 4.687773
4304941 5.960486
4304942 8.362059

Total number of rows: 1201338

Table truncated, full table size 19840 Kbytes.




Supplementary file Size Download File type/resource
GSM400475.CEL.gz 39.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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