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Sample GSM400477 Query DataSets for GSM400477
Status Public on May 08, 2009
Title pancreas 82
Sample type RNA
 
Source name pancreas
Organism Mus musculus
Characteristics tissue: pancreas
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description pancreas
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 1.868167
4304921 1.924885
4304922 3.191241
4304923 5.701079
4304925 7.692035
4304927 2.157973
4304928 12.026415
4304929 10.746635
4304930 3.449779
4304931 3.649604
4304932 5.435886
4304933 7.396559
4304934 4.410872
4304935 3.526973
4304937 6.614499
4304938 2.29391
4304939 1.824075
4304940 3.696007
4304941 4.646657
4304942 8.066202

Total number of rows: 1201338

Table truncated, full table size 19836 Kbytes.




Supplementary file Size Download File type/resource
GSM400477.CEL.gz 37.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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