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Sample GSM400486 Query DataSets for GSM400486
Status Public on May 08, 2009
Title amygdala 91
Sample type RNA
 
Source name amygdala
Organism Mus musculus
Characteristics tissue: amygdala
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description amygdala
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.72436
4304921 2.47239
4304922 4.928558
4304923 7.096058
4304925 6.984059
4304927 2.332814
4304928 11.103935
4304929 9.829419
4304930 2.61117
4304931 2.940659
4304932 3.97199
4304933 5.631249
4304934 3.854586
4304935 3.363394
4304937 9.145224
4304938 2.236604
4304939 2.050258
4304940 4.841583
4304941 2.888408
4304942 8.370789

Total number of rows: 1201338

Table truncated, full table size 19842 Kbytes.




Supplementary file Size Download File type/resource
GSM400486.CEL.gz 39.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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