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Sample GSM400489 Query DataSets for GSM400489
Status Public on May 08, 2009
Title adipose white 94
Sample type RNA
 
Source name adipose_white
Organism Mus musculus
Characteristics tissue: adipose white
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description adipose_white
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.235921
4304921 2.108733
4304922 4.231248
4304923 7.723182
4304925 6.751589
4304927 3.338257
4304928 11.558104
4304929 10.409752
4304930 3.119276
4304931 4.0462
4304932 4.27199
4304933 5.825645
4304934 3.579141
4304935 2.247392
4304937 4.503671
4304938 2.676679
4304939 1.972975
4304940 4.081579
4304941 4.290374
4304942 8.347176

Total number of rows: 1201338

Table truncated, full table size 19840 Kbytes.




Supplementary file Size Download File type/resource
GSM400489.CEL.gz 39.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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