NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM400497 Query DataSets for GSM400497
Status Public on May 08, 2009
Title umbilical cord 102
Sample type RNA
 
Source name umbilical_cord
Organism Mus musculus
Characteristics tissue: umbilical cord
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description umbilical_cord
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.058254
4304921 2.846917
4304922 3.550411
4304923 5.730361
4304925 6.866261
4304927 3.319562
4304928 11.517909
4304929 10.276981
4304930 3.551325
4304931 3.966957
4304932 5.759832
4304933 4.663723
4304934 3.483834
4304935 4.439703
4304937 2.856711
4304938 3.941386
4304939 1.742471
4304940 2.805581
4304941 6.057377
4304942 8.73594

Total number of rows: 1201338

Table truncated, full table size 19837 Kbytes.




Supplementary file Size Download File type/resource
GSM400497.CEL.gz 38.8 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap