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GEO accession:
Sample GSM4544754
Query DataSets for GSM4544754
Status
Public on Apr 06, 2021
Title
Bgal+Exp 6
Sample type
protein
Source name
Bgal+
Organism
Mus musculus
Characteristics
cell type: Primary beta-cells
treatment: beta cells
Extracted molecule
protein
Extraction protocol
Primary beta-cells or Min6 cells were culture in serum-free medium and used conditioned media were collected.
Label
n/a
Label protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Hybridization protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Scan protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Description
s1027
Data processing
Normalization and interrun calibration were performed as described elsewhere (
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
) In brief, correction for systematic effects on the data introduced during the hybridization step, median normalization within an array, and calibration between plates were performed.
Submission date
May 11, 2020
Last update date
Apr 06, 2021
Contact name
Hui Pan
E-mail(s)
Hui.Pan@joslin.harvard.edu
Organization name
Joslin Diabetes Center
Department
Bioinformatics and Biostatistics Core
Street address
1 Joslin Place
City
Boston
ZIP/Postal code
02215
Country
USA
Platform ID
GPL28516
Series (1)
GSE150285
SASP signature of beta-cells includes pro-inflammatory and stress response proteins
Data table header descriptions
ID_REF
VALUE
Log2 intensity
Data table
ID_REF
VALUE
SL019100
7.899054756
SL007136
7.6043679
SL001731
10.95898763
SL019096
5.478971805
SL005173
8.57856139
SL007221
9.451829277
SL007108
11.1842555
SL000455
7.437127844
SL003755
7.087462841
SL014684
5.984133595
SL002565
6.586464526
SL004097
8.73470962
SL004101
7.092757141
SL005184
7.019034669
SL001728
7.800252806
SL001716
5.482202926
SL004396
5.357552005
SL007229
7.130313146
SL017128
9.722978254
SL001791
9.437960088
Total number of rows:
1317
Table truncated, full table size
26 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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