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GEO accession:
Sample GSM4544755
Query DataSets for GSM4544755
Status
Public on Apr 06, 2021
Title
Min6 B4
Sample type
protein
Source name
Min6_Bleomycin
Organism
Mus musculus
Characteristics
cell type: Min6 cells
treatment: Bleomycin
Extracted molecule
protein
Extraction protocol
Primary beta-cells or Min6 cells were culture in serum-free medium and used conditioned media were collected.
Label
n/a
Label protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Hybridization protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Scan protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Description
s1011
Data processing
Normalization and interrun calibration were performed as described elsewhere (
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
) In brief, correction for systematic effects on the data introduced during the hybridization step, median normalization within an array, and calibration between plates were performed.
Submission date
May 11, 2020
Last update date
Apr 06, 2021
Contact name
Hui Pan
E-mail(s)
Hui.Pan@joslin.harvard.edu
Organization name
Joslin Diabetes Center
Department
Bioinformatics and Biostatistics Core
Street address
1 Joslin Place
City
Boston
ZIP/Postal code
02215
Country
USA
Platform ID
GPL28516
Series (1)
GSE150285
SASP signature of beta-cells includes pro-inflammatory and stress response proteins
Data table header descriptions
ID_REF
VALUE
Log2 intensity
Data table
ID_REF
VALUE
SL019100
12.4336376
SL007136
12.04882741
SL001731
13.80281925
SL019096
9.986837537
SL005173
11.72024426
SL007221
13.29397449
SL007108
11.54530237
SL000455
10.17417668
SL003755
9.648177796
SL014684
8.052568051
SL002565
7.781359714
SL004097
15.01298674
SL004101
10.94529751
SL005184
8.552669098
SL001728
9.227856573
SL001716
6.545350645
SL004396
7.208478242
SL007229
9.707531693
SL017128
12.93658273
SL001791
13.26523411
Total number of rows:
1317
Table truncated, full table size
26 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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