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GEO accession:
Sample GSM4544761
Query DataSets for GSM4544761
Status
Public on Apr 06, 2021
Title
Bgal-Exp 1
Sample type
protein
Source name
Bgal-
Organism
Mus musculus
Characteristics
cell type: Primary beta-cells
treatment: beta cells
Extracted molecule
protein
Extraction protocol
Primary beta-cells or Min6 cells were culture in serum-free medium and used conditioned media were collected.
Label
n/a
Label protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Hybridization protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Scan protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Description
s1015
Data processing
Normalization and interrun calibration were performed as described elsewhere (
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
) In brief, correction for systematic effects on the data introduced during the hybridization step, median normalization within an array, and calibration between plates were performed.
Submission date
May 11, 2020
Last update date
Apr 06, 2021
Contact name
Hui Pan
E-mail(s)
Hui.Pan@joslin.harvard.edu
Organization name
Joslin Diabetes Center
Department
Bioinformatics and Biostatistics Core
Street address
1 Joslin Place
City
Boston
ZIP/Postal code
02215
Country
USA
Platform ID
GPL28516
Series (1)
GSE150285
SASP signature of beta-cells includes pro-inflammatory and stress response proteins
Data table header descriptions
ID_REF
VALUE
Log2 intensity
Data table
ID_REF
VALUE
SL019100
8.266786541
SL007136
7.319220503
SL001731
10.11556392
SL019096
5.472487771
SL005173
8.927185358
SL007221
8.801546703
SL007108
11.15703107
SL000455
7.58345891
SL003755
7.193771743
SL014684
5.911691582
SL002565
6.601399391
SL004097
9.078951341
SL004101
7.259272487
SL005184
7.008988783
SL001728
7.830990481
SL001716
5.504620392
SL004396
5.385431037
SL007229
7.092757141
SL017128
10.01945173
SL001791
9.490650349
Total number of rows:
1317
Table truncated, full table size
26 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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