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GEO accession:
Sample GSM4544763
Query DataSets for GSM4544763
Status
Public on Apr 06, 2021
Title
Bgal-Exp 2
Sample type
protein
Source name
Bgal-
Organism
Mus musculus
Characteristics
cell type: Primary beta-cells
treatment: beta cells
Extracted molecule
protein
Extraction protocol
Primary beta-cells or Min6 cells were culture in serum-free medium and used conditioned media were collected.
Label
n/a
Label protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Hybridization protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Scan protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Description
s1016
Data processing
Normalization and interrun calibration were performed as described elsewhere (
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
) In brief, correction for systematic effects on the data introduced during the hybridization step, median normalization within an array, and calibration between plates were performed.
Submission date
May 11, 2020
Last update date
Apr 06, 2021
Contact name
Hui Pan
E-mail(s)
Hui.Pan@joslin.harvard.edu
Organization name
Joslin Diabetes Center
Department
Bioinformatics and Biostatistics Core
Street address
1 Joslin Place
City
Boston
ZIP/Postal code
02215
Country
USA
Platform ID
GPL28516
Series (1)
GSE150285
SASP signature of beta-cells includes pro-inflammatory and stress response proteins
Data table header descriptions
ID_REF
VALUE
Log2 intensity
Data table
ID_REF
VALUE
SL019100
9.305377786
SL007136
7.967514481
SL001731
9.903279342
SL019096
6.332707934
SL005173
8.981281854
SL007221
8.992938336
SL007108
11.55185243
SL000455
7.564530601
SL003755
7.336283388
SL014684
6.187846909
SL002565
6.776103988
SL004097
7.913487841
SL004101
7.232660757
SL005184
7.209453366
SL001728
7.953614461
SL001716
5.495055528
SL004396
5.596935142
SL007229
7.221103725
SL017128
9.983848674
SL001791
9.538188932
Total number of rows:
1317
Table truncated, full table size
26 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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