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GEO accession:
Sample GSM4544766
Query DataSets for GSM4544766
Status
Public on Apr 06, 2021
Title
Bgal+Exp 4
Sample type
protein
Source name
Bgal+
Organism
Mus musculus
Characteristics
cell type: Primary beta-cells
treatment: beta cells
Extracted molecule
protein
Extraction protocol
Primary beta-cells or Min6 cells were culture in serum-free medium and used conditioned media were collected.
Label
n/a
Label protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Hybridization protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Scan protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Description
s1025
Data processing
Normalization and interrun calibration were performed as described elsewhere (
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
) In brief, correction for systematic effects on the data introduced during the hybridization step, median normalization within an array, and calibration between plates were performed.
Submission date
May 11, 2020
Last update date
Apr 06, 2021
Contact name
Hui Pan
E-mail(s)
Hui.Pan@joslin.harvard.edu
Organization name
Joslin Diabetes Center
Department
Bioinformatics and Biostatistics Core
Street address
1 Joslin Place
City
Boston
ZIP/Postal code
02215
Country
USA
Platform ID
GPL28516
Series (1)
GSE150285
SASP signature of beta-cells includes pro-inflammatory and stress response proteins
Data table header descriptions
ID_REF
VALUE
Log2 intensity
Data table
ID_REF
VALUE
SL019100
8.702519029
SL007136
8.15936681
SL001731
11.42211734
SL019096
5.205548911
SL005173
9.274727573
SL007221
10.22001549
SL007108
11.17648485
SL000455
7.524345816
SL003755
7.338959175
SL014684
6.161887682
SL002565
6.590961241
SL004097
8.942514505
SL004101
7.321928095
SL005184
7.087462841
SL001728
7.893604905
SL001716
5.469234794
SL004396
5.266786541
SL007229
7.447083226
SL017128
10.49235395
SL001791
9.714073758
Total number of rows:
1317
Table truncated, full table size
26 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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