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GEO accession:
Sample GSM4544768
Query DataSets for GSM4544768
Status
Public on Apr 06, 2021
Title
Bgal-Exp 4
Sample type
protein
Source name
Bgal-
Organism
Mus musculus
Characteristics
cell type: Primary beta-cells
treatment: beta cells
Extracted molecule
protein
Extraction protocol
Primary beta-cells or Min6 cells were culture in serum-free medium and used conditioned media were collected.
Label
n/a
Label protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Hybridization protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Scan protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Description
s1018
Data processing
Normalization and interrun calibration were performed as described elsewhere (
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
) In brief, correction for systematic effects on the data introduced during the hybridization step, median normalization within an array, and calibration between plates were performed.
Submission date
May 11, 2020
Last update date
Apr 06, 2021
Contact name
Hui Pan
E-mail(s)
Hui.Pan@joslin.harvard.edu
Organization name
Joslin Diabetes Center
Department
Bioinformatics and Biostatistics Core
Street address
1 Joslin Place
City
Boston
ZIP/Postal code
02215
Country
USA
Platform ID
GPL28516
Series (1)
GSE150285
SASP signature of beta-cells includes pro-inflammatory and stress response proteins
Data table header descriptions
ID_REF
VALUE
Log2 intensity
Data table
ID_REF
VALUE
SL019100
9.269360484
SL007136
8.301953395
SL001731
10.57922164
SL019096
6.266786541
SL005173
8.878050913
SL007221
9.239121132
SL007108
11.4718276
SL000455
7.592457037
SL003755
7.174925683
SL014684
5.981852653
SL002565
6.58345891
SL004097
8.997744026
SL004101
7.184875343
SL005184
7.128252152
SL001728
7.837312556
SL001716
5.491853096
SL004396
5.504620392
SL007229
7.275193334
SL017128
10.13108526
SL001791
9.504818988
Total number of rows:
1317
Table truncated, full table size
26 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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