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GEO accession:
Sample GSM4544777
Query DataSets for GSM4544777
Status
Public on Apr 06, 2021
Title
Min6 B6
Sample type
protein
Source name
Min6_Bleomycin
Organism
Mus musculus
Characteristics
cell type: Min6 cells
treatment: Bleomycin
Extracted molecule
protein
Extraction protocol
Primary beta-cells or Min6 cells were culture in serum-free medium and used conditioned media were collected.
Label
n/a
Label protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Hybridization protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Scan protocol
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
Description
s1013
Data processing
Normalization and interrun calibration were performed as described elsewhere (
http://www.somalogic.com/wp-content/uploads/2016/08/SSM-002-Rev-3-SOMAscan-Technical-White-Paper.pdf
) In brief, correction for systematic effects on the data introduced during the hybridization step, median normalization within an array, and calibration between plates were performed.
Submission date
May 11, 2020
Last update date
Apr 06, 2021
Contact name
Hui Pan
E-mail(s)
Hui.Pan@joslin.harvard.edu
Organization name
Joslin Diabetes Center
Department
Bioinformatics and Biostatistics Core
Street address
1 Joslin Place
City
Boston
ZIP/Postal code
02215
Country
USA
Platform ID
GPL28516
Series (1)
GSE150285
SASP signature of beta-cells includes pro-inflammatory and stress response proteins
Data table header descriptions
ID_REF
VALUE
Log2 intensity
Data table
ID_REF
VALUE
SL019100
13.05590941
SL007136
12.29352913
SL001731
14.2680229
SL019096
9.436711542
SL005173
11.81985975
SL007221
12.19041115
SL007108
11.73986498
SL000455
10.6329952
SL003755
9.840148475
SL014684
7.801546703
SL002565
7.789207575
SL004097
14.81254836
SL004101
10.95157614
SL005184
8.66498053
SL001728
9.181400762
SL001716
6.607330314
SL004396
7.048759312
SL007229
9.728090574
SL017128
12.97244137
SL001791
12.96103361
Total number of rows:
1317
Table truncated, full table size
26 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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