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Sample GSM484785 Query DataSets for GSM484785
Status Public on Dec 14, 2009
Title Control testis - postpartum development - N 13 day A
Sample type RNA
 
Source name Testis, age-matched controls, postnatal developmental series
Organism Mus musculus
Characteristics genotype/variation: WT
tissue: testis
age post partum: 13 days
testosterone dose: none
time post testosterone injection: n/a
Treatment protocol For the two rescue series, testosterone propionate was administered as a single intraperitoneal injection at 19 days post partum
Extracted molecule total RNA
Extraction protocol RNA was extracted with TRI reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description no additional information
Data processing The data were normalised using quantile normalisation with BeadStudio
 
Submission date Dec 14, 2009
Last update date Dec 14, 2009
Contact name Peter James Ellis
E-mail(s) p.j.i.ellis@kent.ac.uk
Phone 07808167834
Organization name University of Kent
Department School of Biosciences
Street address Stacey Building
City Canterbury
State/province Kent
ZIP/Postal code CT2 7NJ
Country United Kingdom
 
Platform ID GPL6887
Series (1)
GSE19453 Transcriptional profiling of luteinising hormone receptor deficient mice before and after testosterone treatment

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212602 210.1242 0
ILMN_1212603 77.99033 0.4834071
ILMN_1212605 570.9321 0
ILMN_1212607 95.24149 0.1349557
ILMN_1212612 112.571 0.008849557
ILMN_1212614 56.76606 0.9955752
ILMN_1212619 192.4021 0
ILMN_1212623 75.94186 0.5475664
ILMN_1212625 811.4562 0
ILMN_1212626 866.0295 0
ILMN_1212628 69.42587 0.7820796
ILMN_1212632 187.3141 0
ILMN_1212633 173.6507 0
ILMN_1212636 5173.585 0
ILMN_1212637 1812.415 0
ILMN_1212638 17920.32 0
ILMN_1212639 164.8009 0
ILMN_1212644 88.10377 0.2278761
ILMN_1212645 85.57269 0.2754425
ILMN_1212646 1699.524 0

Total number of rows: 45281

Table truncated, full table size 1243 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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